Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_I18
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 93 7e-20
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 93 9e-20
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 58 3e-09
01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044... 32 0.23
09_04_0373 - 17037945-17040641 30 0.92
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 29 1.2
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 27 6.5
04_03_0916 + 20794240-20794246,20794585-20796545 27 6.5
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 27 6.5
12_02_0683 + 22006770-22006935,22007030-22007274,22007524-220077... 27 8.6
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 27 8.6
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 27 8.6
01_06_0845 - 32389889-32389909,32390074-32390241,32390334-323904... 27 8.6
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 93.5 bits (222), Expect = 7e-20
Identities = 43/74 (58%), Positives = 57/74 (77%)
Frame = +1
Query: 106 RDKLNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQV 285
++K+NN VLFD+ TY KL EVP+YK ITP+V+SERL++ GSL R A+ +L ++GLI+ V
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDLMDRGLIRMV 93
Query: 286 VQHHGQVIYTRATN 327
H Q IYTRATN
Sbjct: 94 SVHCSQQIYTRATN 107
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 93.1 bits (221), Expect = 9e-20
Identities = 43/74 (58%), Positives = 56/74 (75%)
Frame = +1
Query: 106 RDKLNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQV 285
++K+NN VLFD+ TY KL EVP+YK ITP+V+SERL++ GSL R A+ +L +GLI+ V
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMV 93
Query: 286 VQHHGQVIYTRATN 327
H Q IYTRATN
Sbjct: 94 SVHSSQQIYTRATN 107
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 58.0 bits (134), Expect = 3e-09
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +1
Query: 106 RDKLNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLK 219
++K+NN VLFDK TY KL EVP+YK ITP+V+SERL+
Sbjct: 968 KEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 39.9 bits (89), Expect = 9e-04
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +1
Query: 220 VRGSLXRXALIELREKGLIKQVVQHHGQVIYTRATN 327
+ GSL R A+ +L +G I+ V H Q+IYTRATN
Sbjct: 1090 INGSLARQAIKDLESRGAIRVVSVHSSQLIYTRATN 1125
>01_05_0662 -
24103475-24103735,24103831-24104085,24104280-24104451,
24104535-24104762,24104864-24104997,24105101-24105184,
24105273-24105563,24105660-24105992,24106081-24106334,
24106435-24106591,24106674-24106777,24106879-24107039,
24107216-24107529,24107614-24107895,24107991-24108292,
24108367-24108457,24108566-24108619,24108785-24108861,
24108963-24109207,24109322-24109410,24110811-24111254
Length = 1443
Score = 31.9 bits (69), Expect = 0.23
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 114 LVTNFSFGPLLLLGFAATGSFLLSSVFFEAVW 19
+V + +FGPL LL FAA G F+L+ + W
Sbjct: 662 MVVSHTFGPLSLLAFAALGGFILARPDVKKWW 693
>09_04_0373 - 17037945-17040641
Length = 898
Score = 29.9 bits (64), Expect = 0.92
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 74 ALPPPDPSC*VLCFLRLFGRS 12
++PPP+P L FLRL+GRS
Sbjct: 848 SVPPPEPRVEALGFLRLYGRS 868
>01_03_0179 +
13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 114 LVTNFSFGPLLLLGFAATGSFLLSSVFFEAVW 19
+V + +FGPL LL F A G F+L+ + W
Sbjct: 710 MVVSQTFGPLSLLAFTALGGFILARPDVKKWW 741
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 187 ITPAVVSERLKVRGSLXRXALIELREKGLIKQVVQHHGQVIYTRATNGD 333
+TPAV E+ + + R L + RE I+ +QH+ Q+++ + D
Sbjct: 613 LTPAVYLEQHRFKLEKARQRLTDHRECQNIEATIQHNQQLVHVEKSKLD 661
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 205 IRQQV*LACTVGLPCTVXH-MWVYQTTPGCSTCHELFLWTTSSSWLCRHRI 56
I Q + L +G C + VY+ P S H+LF T+ +W R+ I
Sbjct: 399 IIQHINLVKLIGFCCEGGRRLLVYEHMPNRSLDHQLFQTNTTLTWNIRYEI 449
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 129 HLVVQLVTNFSFGPLLLLGFAATGSFLLSSVFFEAVW 19
HL +L T+ S G LG+ S ++ +F+E VW
Sbjct: 235 HLEPEL-TSLSEGDREALGYILKASIVIDDIFYEQVW 270
>12_02_0683 +
22006770-22006935,22007030-22007274,22007524-22007727,
22007847-22007939,22008015-22008107,22008196-22008537,
22008675-22008737,22008812-22008892
Length = 428
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 21 KQPQKTQNSAGRIRWRQSQEEEVVQRKSS*QVEQPGVV 134
+QP+ QN GR+ W +V+ ++ QV G++
Sbjct: 276 EQPELAQNDQGRVAWEGDALNKVLGKEKPGQVHGMGLL 313
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 363 NLYHSLCDWIIAVGRTRVDHLPMMLDYLF 277
NL+H++ DW A +RV LP + +F
Sbjct: 347 NLFHTITDWYSAYVSSRVTDLPNRPNVVF 375
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 218 FNLSDTTAGVISLYCGTSLYSXSYVGL--SNNTWLFNLSRTFPLDHFFFL 75
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 843 FFVAQLIATLIAVYANWAFTSIKGIGWGWAGIVWLYNLVFYFPLDIIKFL 892
>01_06_0845 -
32389889-32389909,32390074-32390241,32390334-32390453,
32390982-32391068,32391149-32391217,32391448-32391510,
32391648-32391989,32392245-32392337,32392457-32392660,
32392910-32393154,32393249-32393414
Length = 525
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 21 KQPQKTQNSAGRIRWRQSQEEEVVQRKSS*QVEQPGVV 134
+QP+ QN GR+ W +V+ ++ QV G++
Sbjct: 245 EQPELAQNDQGRVAWEGDALNKVLGKEKPGQVHGMGLL 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,004,680
Number of Sequences: 37544
Number of extensions: 185273
Number of successful extensions: 459
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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