Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_I18
         (432 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03289-1|AAA03464.1|  113|Drosophila melanogaster protein ( Dros...   140   6e-34
AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p pro...   140   6e-34
AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB...   140   6e-34
AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA...   140   6e-34
AY071361-1|AAL48983.1|  521|Drosophila melanogaster RE39556p pro...    27   8.2  
AE014297-1601|AAF54879.2|  521|Drosophila melanogaster CG7091-PA...    27   8.2  

>U03289-1|AAA03464.1|  113|Drosophila melanogaster protein (
           Drosophila melanogasterSevelin ribosomal protein homolog
           gene, partial cds. ).
          Length = 113

 Score =  140 bits (340), Expect = 6e-34
 Identities = 67/78 (85%), Positives = 71/78 (91%)
 Frame = +1

Query: 103 VRDKLNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQ 282
           VRDKLNNQVLFDK TY KLYKEVP YKLITP+VVSERLK+RGSL + ALIELREKGLIKQ
Sbjct: 35  VRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLDKRALIELREKGLIKQ 94

Query: 283 VVQHHGQVIYTRATNGDD 336
           VVQHH QVIYTRAT GD+
Sbjct: 95  VVQHHSQVIYTRATKGDE 112


>AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p
           protein.
          Length = 117

 Score =  140 bits (340), Expect = 6e-34
 Identities = 67/78 (85%), Positives = 71/78 (91%)
 Frame = +1

Query: 103 VRDKLNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQ 282
           VRDKLNNQVLFDK TY KLYKEVP YKLITP+VVSERLK+RGSL + ALIELREKGLIKQ
Sbjct: 39  VRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQ 98

Query: 283 VVQHHGQVIYTRATNGDD 336
           VVQHH QVIYTRAT GD+
Sbjct: 99  VVQHHSQVIYTRATKGDE 116


>AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB,
           isoform B protein.
          Length = 117

 Score =  140 bits (340), Expect = 6e-34
 Identities = 67/78 (85%), Positives = 71/78 (91%)
 Frame = +1

Query: 103 VRDKLNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQ 282
           VRDKLNNQVLFDK TY KLYKEVP YKLITP+VVSERLK+RGSL + ALIELREKGLIKQ
Sbjct: 39  VRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQ 98

Query: 283 VVQHHGQVIYTRATNGDD 336
           VVQHH QVIYTRAT GD+
Sbjct: 99  VVQHHSQVIYTRATKGDE 116


>AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA,
           isoform A protein.
          Length = 117

 Score =  140 bits (340), Expect = 6e-34
 Identities = 67/78 (85%), Positives = 71/78 (91%)
 Frame = +1

Query: 103 VRDKLNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQ 282
           VRDKLNNQVLFDK TY KLYKEVP YKLITP+VVSERLK+RGSL + ALIELREKGLIKQ
Sbjct: 39  VRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQ 98

Query: 283 VVQHHGQVIYTRATNGDD 336
           VVQHH QVIYTRAT GD+
Sbjct: 99  VVQHHSQVIYTRATKGDE 116


>AY071361-1|AAL48983.1|  521|Drosophila melanogaster RE39556p
           protein.
          Length = 521

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 293 CWTTCLMRPFSLSSMSAXLXR 231
           CW  CL+  +++SSMS  L R
Sbjct: 2   CWRLCLLHRYAMSSMSWTLPR 22


>AE014297-1601|AAF54879.2|  521|Drosophila melanogaster CG7091-PA
           protein.
          Length = 521

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 293 CWTTCLMRPFSLSSMSAXLXR 231
           CW  CL+  +++SSMS  L R
Sbjct: 2   CWRLCLLHRYAMSSMSWTLPR 22


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,699,407
Number of Sequences: 53049
Number of extensions: 314226
Number of successful extensions: 734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1355285490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)