Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_I18
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   114   2e-26
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    28   3.3  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    27   7.7  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    27   7.7  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    27   7.7  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  114 bits (275), Expect = 2e-26
 Identities = 56/80 (70%), Positives = 63/80 (78%)
 Frame = +1

Query: 103 VRDKLNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQ 282
           VRDKLNN VLFD+ TY KLYKEV  YKLITP+VVSERLKVR SL +  L EL+ KGL+K 
Sbjct: 36  VRDKLNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKC 95

Query: 283 VVQHHGQVIYTRATNGDDPV 342
           VV HHGQV+YTRAT   D +
Sbjct: 96  VVHHHGQVVYTRATKEADVI 115


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 33  KTQNSAGRIRWRQSQEEEVVQRK 101
           + +N A RIRW+   +EE+V R+
Sbjct: 36  EVRNDAIRIRWKHDSDEEIVTRQ 58


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 42  SVFFEAVWPKPXR 4
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 254 SMSAXLXREPRTFNLSDTTAGVISLYCG 171
           S++  +  E   F+LSDT   ++ L+CG
Sbjct: 2   SVNRTISLENGKFDLSDTIVNIVELFCG 29


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
 Frame = -3

Query: 139 YQTTPGCS----TCHELFLWTTSSSWLCRHRILPAEFC 38
           YQ    CS    TC   F W     W CR R++    C
Sbjct: 365 YQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNC 402


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,399,782
Number of Sequences: 27780
Number of extensions: 159059
Number of successful extensions: 408
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)