Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_I16
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    34   0.021
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.8  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    27   2.4  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   3.1  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   5.5  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    25   9.5  

>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 226 VDFPLYTLQTLTNRHVIVAGGGGASNTGVANGFEI 330
           + FP Y+L  + N  + V GGGG + +GV N  ++
Sbjct: 6   LSFPAYSLCWINNHQMAVGGGGGTTKSGVKNKLKL 40


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 377 ITSSATNLFPLCDSSNISNPFATPVFDAPPPPATMTCRF 261
           I SSAT+ FP     ++S   +T +    PPPA+ T  F
Sbjct: 162 IYSSATSSFPYSTDVSVSTGTSTDIVTL-PPPASSTSSF 199


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 250 QTLTNRHVIVAGGGGASNTGV 312
           +TLT RH+ + G GGA  TGV
Sbjct: 81  RTLTARHIQMIGIGGAIGTGV 101


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 544 GLVRRRRRTVSENDNISKKNNV 609
           G VRR    VS ND ++KKN++
Sbjct: 456 GTVRRPPSLVSSNDELNKKNDI 477


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 374 TSSATNLFPLCDSSNISNPFATPVFDAPPPPATMTC 267
           T S ++   L D++N++    TP+ D P P ++ TC
Sbjct: 372 TGSESSAVSLSDTTNLN----TPISDIPSPGSSTTC 403


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 408 DVFRKEHPEPDVSHSGTREPLSAVQXEHPH 497
           ++F+K+ P  ++ H  +R PL+A++    H
Sbjct: 6   NLFKKKSPTHELFHPLSRSPLTALRRRSEH 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,013
Number of Sequences: 5004
Number of extensions: 47071
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)