Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_I15
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 97 2e-21
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 66 6e-12
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 65 7e-12
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 60 3e-10
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 56 4e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 55 8e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 55 1e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 53 4e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 53 4e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 52 7e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 52 7e-08
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 49 7e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 46 6e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 42 8e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 41 1e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 3e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 39 5e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 39 7e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 33 0.027
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 31 0.11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 31 0.19
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.25
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.77
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.0
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 1.8
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 4.1
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 5.5
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.2
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 25 9.5
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 25 9.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 97.1 bits (231), Expect = 2e-21
Identities = 41/70 (58%), Positives = 54/70 (77%)
Frame = +1
Query: 445 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 624
G+ V P+ FEEA FP+YV + VK +G++ PTPIQ Q WP+AMSG+++ G+ TGSGKT
Sbjct: 114 GLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKT 173
Query: 625 LAYILPAIVH 654
L+Y LPAIVH
Sbjct: 174 LSYCLPAIVH 183
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 306 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEXEXYTNKHEVTVSG 446
N+ + DW + +L PF K+FY H V RS E Y + E+ V G
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHG 114
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 65.7 bits (153), Expect = 6e-12
Identities = 28/69 (40%), Positives = 46/69 (66%)
Frame = +1
Query: 445 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 624
G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L G+ +TGSGKT
Sbjct: 241 GDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKT 300
Query: 625 LAYILPAIV 651
A+I+P I+
Sbjct: 301 AAFIIPLII 309
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 65.3 bits (152), Expect = 7e-12
Identities = 28/62 (45%), Positives = 45/62 (72%)
Frame = +1
Query: 463 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 642
PI F+E + +++G+K YKEPTPIQA WP ++G+++ G+ +TGSGKT+A+ +P
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 643 AI 648
A+
Sbjct: 223 AL 224
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 60.1 bits (139), Expect = 3e-10
Identities = 25/70 (35%), Positives = 42/70 (60%)
Frame = +1
Query: 445 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 624
G++ P+ + + + ++GY++PT IQAQ P SG+++ GV +TGSGKT
Sbjct: 410 GIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKT 469
Query: 625 LAYILPAIVH 654
+A++LP H
Sbjct: 470 IAFLLPMFRH 479
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 56.0 bits (129), Expect = 4e-09
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +1
Query: 463 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 642
P+ F ++ Q +K GY +PTP+Q PI SG++L QTGSGKT ++ P
Sbjct: 167 PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFP 226
Query: 643 AI 648
+
Sbjct: 227 IL 228
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 55.2 bits (127), Expect = 8e-09
Identities = 23/58 (39%), Positives = 38/58 (65%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
F+E D + + + +G+K PTPIQ + P+ ++ +++ G+ QTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 54.8 bits (126), Expect = 1e-08
Identities = 22/61 (36%), Positives = 40/61 (65%)
Frame = +1
Query: 466 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPA 645
I+ F + + +Q+ +K MG++ T IQ + P ++G+++ G +TGSGKTLA+++P
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 646 I 648
I
Sbjct: 148 I 148
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 52.8 bits (121), Expect = 4e-08
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 642
F+ N +++ V G+K+ TP+QA P+ + K+L TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP 58
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 52.8 bits (121), Expect = 4e-08
Identities = 21/60 (35%), Positives = 37/60 (61%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 654
F+ + + + G+K PTPIQ + P+ + G+++ G+ +TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 52.0 bits (119), Expect = 7e-08
Identities = 21/68 (30%), Positives = 41/68 (60%)
Frame = +1
Query: 445 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 624
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+L +TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 625 LAYILPAI 648
AY++P +
Sbjct: 66 AAYLIPIL 73
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 52.0 bits (119), Expect = 7e-08
Identities = 22/58 (37%), Positives = 37/58 (63%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
F+ N + +G+ +G++ PT IQ + P+A+ GK++ G TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPIL 318
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 48.8 bits (111), Expect = 7e-07
Identities = 19/58 (32%), Positives = 37/58 (63%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
FE+ + G+ G++ P+PIQ + PIA+SG+++ + G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSL 103
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 45.6 bits (103), Expect = 6e-06
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +1
Query: 466 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPA 645
+ +F E + +K + T IQ Q P A+ G+++ G +TGSGKTLA+I+P
Sbjct: 38 VDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPL 97
Query: 646 I 648
I
Sbjct: 98 I 98
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +1
Query: 466 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLXGVXQTGSGKTLAYIL 639
++ FEE + +G+ +M +++P+ IQ + P+ +S +N+ G Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +1
Query: 526 GYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 654
G+ +P PIQ+ P A G ++ G TGSGKTLA+ +P + H
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEH 183
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 39.9 bits (89), Expect = 3e-04
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 457 HNPIQYFEEANFPDYVQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAY 633
+NP+ EE FP+ + + +K E T IQ P S ++L TGSGKT+AY
Sbjct: 43 NNPVDPIEE--FPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAY 100
Query: 634 ILPAI 648
+ P +
Sbjct: 101 LFPIL 105
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 39.1 bits (87), Expect = 5e-04
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +1
Query: 460 NPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAY 633
N + FEE N + + +G+ GY+ P+ +Q++ G+++ Q+G+GKT +
Sbjct: 18 NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATF 75
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
F + ++ +K + EPT IQ + G+N G +TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 33.5 bits (73), Expect = 0.027
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 523 MGYKEPTPIQAQGWPIAMS--GKNLXGVXQTGSGKTLAYILPAI 648
M PT IQ+ P ++ K+ QTGSGKTLAY+LP +
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIV 200
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/61 (21%), Positives = 31/61 (50%)
Frame = +1
Query: 466 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPA 645
I F++ N + +G+ G++ P+ IQ + + +++ Q+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 646 I 648
+
Sbjct: 78 L 78
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 463 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLXGVXQTGSGKTLAYIL 639
P + E A+ + + G+++ TP+Q + + + +N +TG+GKTLA++L
Sbjct: 36 PTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLL 95
Query: 640 PA 645
A
Sbjct: 96 VA 97
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 574 MSGKNLXGVXQTGSGKTLAYILPAIV 651
+SGK++ + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 0.77
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = -2
Query: 326 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--TR 153
P S V PS F ++ S +S AT+AK + +S KF + + T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 152 HDYFSDLVEDVYLNYGFFLSAGS 84
H+Y+++LV+ ++ F S GS
Sbjct: 202 HEYYTELVKVKEASWPLFNSQGS 224
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 586 NLXGVXQTGSGKTLAYILPAIV 651
NL V TG GK+L++++PA++
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALI 1229
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 586 NLXGVXQTGSGKTLAYILPAIV 651
NL V TG GK+L++++PA++
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALI 1229
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 565 PIAMSGKNLXGVXQTGSGKTLAYILPAI 648
P+ G ++ TGSGKTL+Y++P +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIV 195
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -1
Query: 225 NYRRICCLLQIWNHRFHGYYSNYQT*LFFGFS*RCLFKLWI-LSERRV-HLDH 73
NY I C L +WN Y +F + +++W+ SE V H DH
Sbjct: 180 NYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWLEFSELVVQHPDH 232
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 371 WIIKVFVERLE*NRIPIWASHVLPSREF 288
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 526 PLSLHLVAHNQENL--LLQSIE 467
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 218 AEFVASSKFGTT-VSTAIIPITRHDYF 141
A F SS F T V+ ++IPI R+DY+
Sbjct: 448 AFFTVSSLFFTRFVNESLIPILRNDYY 474
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 489 ICFFKVLNRIMNLNAHLQLPRVYLYTXRXHMVI 391
I F VL+ + +N L L ++Y Y R MVI
Sbjct: 85 ILLFGVLSTPITVNLGLTLFKLYFYNKRYDMVI 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,653
Number of Sequences: 5004
Number of extensions: 50927
Number of successful extensions: 146
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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