Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_I15
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 80 1e-15
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 71 7e-13
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 71 7e-13
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 66 2e-11
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 64 8e-11
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 63 1e-10
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 63 1e-10
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 63 1e-10
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 59 2e-09
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 59 3e-09
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 55 4e-08
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 55 4e-08
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 55 4e-08
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 55 5e-08
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 55 5e-08
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 54 1e-07
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 50 1e-06
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 50 1e-06
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 50 1e-06
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 50 1e-06
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 50 1e-06
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 46 2e-05
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 46 2e-05
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 44 1e-04
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 43 2e-04
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 43 2e-04
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 43 2e-04
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 40 0.002
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 39 0.004
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 37 0.014
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 37 0.014
AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical... 37 0.014
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 36 0.019
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 36 0.025
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 36 0.025
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 34 0.077
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 34 0.077
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 34 0.077
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 29 2.2
U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical p... 29 2.2
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 29 2.9
U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical p... 29 3.8
U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical p... 29 3.8
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z75550-6|CAA99930.1| 591|Caenorhabditis elegans Hypothetical pr... 28 6.7
U64840-7|AAB04965.1| 340|Caenorhabditis elegans Hypothetical pr... 27 8.8
U53141-4|AAA96106.1| 528|Caenorhabditis elegans Mutator protein... 27 8.8
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/69 (52%), Positives = 48/69 (69%)
Frame = +1
Query: 445 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 624
G V P++ +EEA FPD V Q VK +GY EPTPIQ Q PI + +++ GV +TGSGKT
Sbjct: 293 GGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKT 352
Query: 625 LAYILPAIV 651
A++LP +V
Sbjct: 353 AAFLLPLLV 361
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 70.9 bits (166), Expect = 7e-13
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
Frame = +1
Query: 337 HSNLSTKTFMIHILQFSKD----HHMXSXSIQINTR*L*VG-VEVHNPIQYFEEANFPDY 501
HS + + F + + +D H+M +Q NT L VG ++ P+ F +F
Sbjct: 217 HSQIQYQKFNKNFYEEHEDIKRLHYMDVIRLQ-NTMNLRVGGLKPPRPVCSFAHFSFDKL 275
Query: 502 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 654
+ + ++ Y++PTPIQA P A+SG+++ G+ +TGSGKT AY+ PAIVH
Sbjct: 276 LMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVH 326
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 321 DWDSVSLQPFNKNFYDPHPTVLKRSPY 401
D + Q FNKNFY+ H + KR Y
Sbjct: 216 DHSQIQYQKFNKNFYEEHEDI-KRLHY 241
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 70.9 bits (166), Expect = 7e-13
Identities = 31/70 (44%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Frame = +1
Query: 448 VEVHNPIQYFEEANFPDYVQQG-VKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 624
V++ P+ FE+A + G ++ G+++P+PIQ+Q WP+ +SG++ GV QTGSGKT
Sbjct: 76 VKIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKT 135
Query: 625 LAYILPAIVH 654
LA++LPA++H
Sbjct: 136 LAFLLPALLH 145
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 66.1 bits (154), Expect = 2e-11
Identities = 31/70 (44%), Positives = 47/70 (67%)
Frame = +1
Query: 445 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 624
G V P+ F EA P + + + +++PT IQ+ WPIAMSG+++ + +TGSGKT
Sbjct: 122 GRGVPRPVFEFNEAPLPGQIHELLYGK-FQKPTVIQSISWPIAMSGRDIISIAKTGSGKT 180
Query: 625 LAYILPAIVH 654
LA++LPA+VH
Sbjct: 181 LAFMLPALVH 190
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 309 MRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEXEXYTNKHEVTVSGR 449
+R DW + +L P K+FY + V +R YE + + + ++VT+ GR
Sbjct: 77 LRDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGR 123
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 64.1 bits (149), Expect = 8e-11
Identities = 25/68 (36%), Positives = 41/68 (60%)
Frame = +1
Query: 445 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 624
G +V PI F + + +++++ +KT GY PTP+Q P G++L QTGSGKT
Sbjct: 158 GDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKT 217
Query: 625 LAYILPAI 648
A+++P +
Sbjct: 218 AAFLVPLV 225
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = +1
Query: 445 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 624
G V I++F EA F V + V GY +PTP+Q P ++ ++L QTGSGKT
Sbjct: 131 GDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKT 190
Query: 625 LAYILPAIVH 654
A++LP I H
Sbjct: 191 AAFLLPIIQH 200
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = +1
Query: 445 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 624
G V I++F EA F V + V GY +PTP+Q P ++ ++L QTGSGKT
Sbjct: 115 GDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKT 174
Query: 625 LAYILPAIVH 654
A++LP I H
Sbjct: 175 AAFLLPIIQH 184
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = +1
Query: 445 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 624
G V I++F EA F V + V GY +PTP+Q P ++ ++L QTGSGKT
Sbjct: 112 GDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKT 171
Query: 625 LAYILPAIVH 654
A++LP I H
Sbjct: 172 AAFLLPIIQH 181
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +1
Query: 445 GVEVHNPIQYFEEANFPDYVQQGV-KTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGK 621
G + PI F E FP + + + K G PT IQ QG P+A+SG+++ G+ TGSGK
Sbjct: 181 GDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGK 240
Query: 622 TLAYILPAIV 651
T+ ++LP ++
Sbjct: 241 TMTFVLPLVM 250
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/70 (38%), Positives = 42/70 (60%)
Frame = +1
Query: 445 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 624
G++ PI+ + + + +K Y +PT IQAQ P MSG+++ G+ +TGSGKT
Sbjct: 296 GIDCPKPIKTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKT 355
Query: 625 LAYILPAIVH 654
LA++LP H
Sbjct: 356 LAFLLPMFRH 365
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = +1
Query: 463 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 642
P + F EAN + +Q+ V GY + TPIQ P+ G ++ QTGSGKT A++LP
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = +1
Query: 463 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 642
P + F EAN + +Q+ V GY + TPIQ P+ G ++ QTGSGKT A++LP
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = +1
Query: 463 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 642
P + F EAN + +Q+ V GY + TPIQ P+ G ++ QTGSGKT A++LP
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLP 398
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +1
Query: 463 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 642
P + F +++ P +++ V+ GY TPIQ P+ GK++ QTGSGKT A++LP
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLP 355
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +1
Query: 463 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 642
P + F +++ P +++ V+ GY TPIQ P+ GK++ QTGSGKT A++LP
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLP 355
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/58 (37%), Positives = 35/58 (60%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
FE+ N + + GY +PTPIQ P+A++GK++ TG+GKT A++LP +
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPIL 207
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 642
F EAN + +++ V GY + TPIQ P+ G ++ QTGSGKT A++LP
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLP 609
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 642
F EAN + +++ V GY + TPIQ P+ G ++ QTGSGKT A++LP
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLP 609
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 642
F EAN + +++ V GY + TPIQ P+ G ++ QTGSGKT A++LP
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLP 609
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/64 (31%), Positives = 37/64 (57%)
Frame = +1
Query: 457 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYI 636
H +++ V + ++ G+ +PTPIQ + P M GK++ + +TGSGKT A++
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFV 79
Query: 637 LPAI 648
+P +
Sbjct: 80 IPML 83
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/64 (31%), Positives = 37/64 (57%)
Frame = +1
Query: 457 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYI 636
H +++ V + ++ G+ +PTPIQ + P M GK++ + +TGSGKT A++
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFV 79
Query: 637 LPAI 648
+P +
Sbjct: 80 IPML 83
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
F + ++ Q ++TM K TP+QA P + G ++ G +TG+GKTLA+ +P +
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPIL 148
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
F + ++ Q ++TM K TP+QA P + G ++ G +TG+GKTLA+ +P +
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPIL 148
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +1
Query: 493 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-NLXGVXQTGSGKTLAYILPAI 648
P+ V + ++ MG+ EPT IQ+ P A+ + ++ G +TGSGKTLA+ +P +
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLV 215
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +1
Query: 508 QGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
+G+K Y +PT IQ +++G ++ G +TGSGKTLA ++P +
Sbjct: 89 EGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVL 135
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +1
Query: 445 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 624
G + N I F +++ + + ++P+PIQ Q P +N+ TGSGKT
Sbjct: 118 GDHLPNIILRFSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKT 177
Query: 625 LAYILPAI 648
LA+ LP I
Sbjct: 178 LAFALPVI 185
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
F E + + +G+ +P+ IQ P A+ GK++ G+ +TGSGKT A+ +P +
Sbjct: 46 FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVL 103
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 493 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIV 651
P + +K M PTPIQ + M G ++ TGSGKTLA+++P ++
Sbjct: 744 PQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVI 796
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 493 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIV 651
P + +K M PTPIQ + M G ++ TGSGKTLA+++P ++
Sbjct: 744 PQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVI 796
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +1
Query: 508 QGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
+ V+ +G+ T IQA+ + GK++ +TGSGKTLA++LPAI
Sbjct: 81 KAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAI 127
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = +1
Query: 511 GVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
G+ G+++P+PIQ +A++G+++ + G+GKT AY +P I
Sbjct: 57 GIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVI 102
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
F + + + + + +G+++ +Q +A+ KN+ G +TGSGKT A+++P +
Sbjct: 91 FADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLV 148
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
FE + +K + P+P+QA+ P+ + G+++ ++G+GKTL + + A+
Sbjct: 24 FESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTGKTLVFSVLAV 81
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
FE + +K + P+P+QA+ P+ + G+++ ++G+GKTL + + A+
Sbjct: 24 FESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTGKTLVFSVLAV 81
>AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical
protein Y55F3BR.1 protein.
Length = 728
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 475 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 642
FEE + + ++ + PT +Q++ P + G + +TGSGKT A+ LP
Sbjct: 4 FEEFGIIPELSDALSSLNWTLPTAVQSEAIPAILGGADALIAAETGSGKTGAFSLP 59
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 529 YKEPTPIQAQGWPIAMSGK-NLXGVXQTGSGKTLAYILPAI 648
+ EPT IQ+ P A+ + ++ G +TGSGKTLA+ +P +
Sbjct: 8 FSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLV 48
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 466 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLXGVXQTGSGKTLAYIL 639
I F E V + + TM ++ PT IQ P+ + NL Q+G+GKT A++L
Sbjct: 208 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVL 267
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 466 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLXGVXQTGSGKTLAYIL 639
I F E V + + TM ++ PT IQ P+ + NL Q+G+GKT A++L
Sbjct: 233 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVL 292
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 466 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLXGVXQTGSGKTLAYIL 639
I F E V + + TM ++ PT IQ P+ + NL Q+G+GKT A++L
Sbjct: 617 ISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVL 676
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/63 (22%), Positives = 34/63 (53%)
Frame = +1
Query: 460 NPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYIL 639
N I F++ + + +G+ G+++P+ IQ + P + +++ Q+G+GKT + +
Sbjct: 23 NVIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSI 82
Query: 640 PAI 648
+
Sbjct: 83 SVL 85
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 34.3 bits (75), Expect = 0.077
Identities = 13/56 (23%), Positives = 32/56 (57%)
Frame = +1
Query: 466 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAY 633
++ F++ + + +G+ G+++P+ IQ + +GK++ Q+G+GKT +
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATF 83
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 34.3 bits (75), Expect = 0.077
Identities = 13/56 (23%), Positives = 32/56 (57%)
Frame = +1
Query: 466 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAY 633
++ F++ + + +G+ G+++P+ IQ + +GK++ Q+G+GKT +
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATF 83
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 34.3 bits (75), Expect = 0.077
Identities = 13/61 (21%), Positives = 33/61 (54%)
Frame = +1
Query: 466 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPA 645
I F++ + + +G+ G+++P+ IQ + P + +++ Q+G+GKT + +
Sbjct: 25 IPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISV 84
Query: 646 I 648
+
Sbjct: 85 L 85
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 175 VETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKN 291
+ETV+ LE N +RL A VA E LE++ GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical
protein F57B9.3 protein.
Length = 363
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 508 QGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYIL 639
+G+ G+++P+ IQ +GK++ Q GSGKT+ ++
Sbjct: 9 RGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLI 52
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 230 RRIIAEFVASSKFGTTVSTAIIPI 159
+++I +FVA S G T+STA P+
Sbjct: 220 QQLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 230 RRIIAEFVASSKFGTTVSTAIIPI 159
+++I +FVA S G T+STA P+
Sbjct: 129 QQLIGDFVAGSLLGATISTAFFPL 152
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 607 TGSGKTLAYILPAIVH 654
TG+GK+L Y LPA+VH
Sbjct: 203 TGAGKSLCYQLPAVVH 218
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +1
Query: 466 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 642
++ F E P+ ++ V YK T +Q ++ ++ TGSGKTLA++LP
Sbjct: 10 LKTFREKLGPELLE--VFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLP 66
>U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical
protein K02F3.12b protein.
Length = 608
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 544 PIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIV 651
P+Q MS ++ + TG GK+L Y LPA++
Sbjct: 89 PLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALL 124
>U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical
protein K02F3.12a protein.
Length = 631
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 544 PIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIV 651
P+Q MS ++ + TG GK+L Y LPA++
Sbjct: 112 PLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALL 147
>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
protein D2005.5 protein.
Length = 1119
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 571 AMSGKNLXGVXQTGSGKTLAYILPAIVH 654
A+ GKN V TGSGKT I A+ H
Sbjct: 382 ALEGKNCVIVAPTGSGKTEVAIYAALKH 409
>Z75550-6|CAA99930.1| 591|Caenorhabditis elegans Hypothetical
protein T22C1.8 protein.
Length = 591
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 3 YRIPFMEEVGSCSSHPFILSSRSSGQGGP 89
++ P E C HP L +RSS + GP
Sbjct: 473 HKSPKTEHPKECKDHPLPLETRSSSEDGP 501
>U64840-7|AAB04965.1| 340|Caenorhabditis elegans Hypothetical
protein ZC317.1 protein.
Length = 340
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 547 IQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
+Q + G+ L TG GKT A+++PAI
Sbjct: 19 VQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAI 52
>U53141-4|AAA96106.1| 528|Caenorhabditis elegans Mutator protein 14
protein.
Length = 528
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 547 IQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 648
+Q + G+ L TG GKT A+++PAI
Sbjct: 119 VQQMSIQVIREGRGLVVEAPTGIGKTYAFLIPAI 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,126,977
Number of Sequences: 27780
Number of extensions: 279095
Number of successful extensions: 861
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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