Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_I13
         (575 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.5  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   7.5  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   7.5  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   9.9  

>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -2

Query: 163 RRPLIPWTAITYRF-FAPVLSAQLITAPSWESPGRYGISLPREPPRPLLDI 14
           RR   P    T R+  A   SA  +  P +      G+  PR PP   +DI
Sbjct: 42  RRAARPGVVTTPRWGCARASSATTMGGPRYGRAAAQGMPYPRFPPYDRMDI 92


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 74 EPREIRNFAPAGTTTSSLR 18
          +PR + NFA   T+T+  R
Sbjct: 29 QPRNVPNFAAPSTSTAVQR 47


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +3

Query: 141 VQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 263
           +QG       +   G+   ++  VKK KPE+    + A ++
Sbjct: 144 IQGTASEATLVALLGAKARMIDRVKKEKPEMSDSEIVAKLV 184


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 442 YTFKISSCVLLSFPSTSKSNPK 507
           Y F++    +L  PS++ S+P+
Sbjct: 272 YNFRVPQHQVLQSPSSTSSSPE 293


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,481
Number of Sequences: 336
Number of extensions: 2709
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)