Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_I13
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   183   1e-47
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   183   1e-47
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   6.0  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  183 bits (446), Expect = 1e-47
 Identities = 80/108 (74%), Positives = 96/108 (88%)
 Frame = +3

Query: 87  AVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 266
           A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V+R
Sbjct: 23  AIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVR 82

Query: 267 QRKPFXXRDGXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 410
           QRK +  +DG ++YFEDNAGVI N KGEMKGSAITGPVAKECADLWPR
Sbjct: 83  QRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  183 bits (446), Expect = 1e-47
 Identities = 80/108 (74%), Positives = 96/108 (88%)
 Frame = +3

Query: 87  AVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 266
           A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V+R
Sbjct: 23  AIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVR 82

Query: 267 QRKPFXXRDGXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 410
           QRK +  +DG ++YFEDNAGVI N KGEMKGSAITGPVAKECADLWPR
Sbjct: 83  QRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 78   QLGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGD-MIVATVKKGK 224
            +LGAVI   D   AK L + A  G+   ++R+    SG    ++  + GK
Sbjct: 943  ELGAVIQVCDRDIAKVLELFAANGLSTCVHRIGKVLSGQAQTISFSRSGK 992


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,989
Number of Sequences: 5004
Number of extensions: 42808
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)