Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_I13
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 192 1e-49
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 192 1e-49
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 192 1e-49
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 63 1e-10
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 29 2.0
03_06_0630 + 35189575-35190216,35190700-35190910,35191001-35191737 28 4.6
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 27 8.1
06_01_0221 + 1690978-1692171,1692265-1692276 27 8.1
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818... 27 8.1
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 192 bits (469), Expect = 1e-49
Identities = 84/110 (76%), Positives = 100/110 (90%)
Frame = +3
Query: 81 LGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVV 260
+ A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV+
Sbjct: 22 VAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVI 81
Query: 261 IRQRKPFXXRDGXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 410
+RQRKP+ +DG ++YFEDNAGVI N KGEMKGSAITGP+ KECADLWPR
Sbjct: 82 VRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 192 bits (469), Expect = 1e-49
Identities = 84/110 (76%), Positives = 100/110 (90%)
Frame = +3
Query: 81 LGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVV 260
+ A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV+
Sbjct: 22 VAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVI 81
Query: 261 IRQRKPFXXRDGXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 410
+RQRKP+ +DG ++YFEDNAGVI N KGEMKGSAITGP+ KECADLWPR
Sbjct: 82 VRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 192 bits (469), Expect = 1e-49
Identities = 84/110 (76%), Positives = 100/110 (90%)
Frame = +3
Query: 81 LGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVV 260
+ A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV+
Sbjct: 39 VAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVI 98
Query: 261 IRQRKPFXXRDGXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 410
+RQRKP+ +DG ++YFEDNAGVI N KGEMKGSAITGP+ KECADLWPR
Sbjct: 99 VRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 148
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 63.3 bits (147), Expect = 1e-10
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Frame = +3
Query: 78 QLGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---VM 248
Q+ + DN+GAK V+ +Q ++G+ A GD I+ +VK+ +P + K V+
Sbjct: 53 QMRTNLKVVDNSGAKR--VMCIQSLRGK----KGARLGDTIIGSVKEAQPRGKVKKGDVV 106
Query: 249 PAVVIRQRKPFXXRDGXFIYFEDNAGVIXNNKGEMKGSAITGPVAKE 389
VV+R DG I F+DNA V+ NNKGE+ G+ + GPV E
Sbjct: 107 YGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHE 153
>03_06_0296 +
32901696-32901892,32901989-32902232,32903992-32904112,
32904219-32904406
Length = 249
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 329 DTRIVLKVYKXSITXXERFPLPDDHCRHYLFPEFRFTLFDCGHNHV 192
+ I+++ Y+ T +R P P D + +F F L+DC +N V
Sbjct: 101 EINIIIEAYR---TLRDRGPYPADQVVRDINGKFAFVLYDCSNNSV 143
>03_06_0630 + 35189575-35190216,35190700-35190910,35191001-35191737
Length = 529
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/53 (37%), Positives = 23/53 (43%)
Frame = +2
Query: 62 SPWALPAGSSNQLRRQHRGKESVCDRSPRYQRSPEQTAGGRFRGHDCGHSQKG 220
SP ALP S+ + R Q R K CD + P GG F D G S G
Sbjct: 32 SPRALPFVSTRKPRNQERKKSRTCDMDQEFHFDP--FTGGDFDYPD-GESFSG 81
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 336 NNKGEMKGSAITGPVAKECAD 398
N+KG +GS ITG + + CA+
Sbjct: 725 NDKGSNQGSFITGKIVESCAE 745
>06_01_0221 + 1690978-1692171,1692265-1692276
Length = 401
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 211 TVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITA 86
++A + S P + + FRR L+P+ A F A S LI A
Sbjct: 160 SLAVLSSSFPPSSAAFRRELLPYMAPLLAFLAKTGSPFLINA 201
>03_05_0524 -
25181432-25181483,25181565-25181691,25181776-25181826,
25182159-25182314,25182405-25182905,25182999-25183713,
25183797-25183867,25183974-25184103,25185706-25186167
Length = 754
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 196 MSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPSWESPGRYGISLPREPPRP 26
M+P P +P + +TA+ + P ++ + APS +P GI P P +P
Sbjct: 18 MTPWPGPPPQPGQPAVVYTALHQGAYQPGVAQVVYWAPSPGAPSLGGIRAPPAPYQP 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,154,391
Number of Sequences: 37544
Number of extensions: 321043
Number of successful extensions: 906
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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