Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_I13
         (575 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA...   213   1e-55
M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal prot...   199   3e-51
AY113597-1|AAM29602.1|  126|Drosophila melanogaster RH47776p pro...    29   3.4  

>AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA
           protein.
          Length = 140

 Score =  213 bits (521), Expect = 1e-55
 Identities = 100/110 (90%), Positives = 103/110 (93%)
 Frame = +3

Query: 81  LGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVV 260
           +GAV+NCADNTGAKNLYVIAV GI+GRLNRLPAAG GDM VATVKKGKPELRKKVMPAVV
Sbjct: 22  VGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVV 81

Query: 261 IRQRKPFXXRDGXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 410
           IRQRKPF  RDG FIYFEDNAGVI NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 82  IRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131


>M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal protein
           L17A protein.
          Length = 140

 Score =  199 bits (485), Expect = 3e-51
 Identities = 94/110 (85%), Positives = 97/110 (88%)
 Frame = +3

Query: 81  LGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVV 260
           +GAV+NCADNTGAKNLYVIAV GI+GRLNRLPAAG GDM VATVKKGKPELRKKV     
Sbjct: 22  VGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVSVVPS 81

Query: 261 IRQRKPFXXRDGXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 410
            RQRKPF  RDG FIYFEDNAGVI NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 82  ARQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131


>AY113597-1|AAM29602.1|  126|Drosophila melanogaster RH47776p
           protein.
          Length = 126

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = +2

Query: 47  ERNSVSPWALPAGSSNQLRRQHRGKESVCDRSPRYQRSPEQTAGGRF-RGHDCGHSQKG 220
           ERN   P ALP      +     G ES  D   RY R+  Q  G RF RG  C     G
Sbjct: 11  ERNKARPAALPDPHHRSVPWSRSG-ESRGDECSRYSRTRCQRTGHRFRRGGRCHRQATG 68


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,236,406
Number of Sequences: 53049
Number of extensions: 530949
Number of successful extensions: 1405
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2276053890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)