Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_I13
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   195   2e-50
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    27   7.2  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  195 bits (476), Expect = 2e-50
 Identities = 90/110 (81%), Positives = 99/110 (90%)
 Frame = +3

Query: 81  LGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVV 260
           +GAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VV
Sbjct: 22  VGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVV 81

Query: 261 IRQRKPFXXRDGXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 410
           IRQRK F  +DG FIYFEDNAGVI NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 82  IRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 467 TQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 336
           T LL  ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 80  TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 178 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 86
           A  LFR  ++P+   TY F   +L   L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 436 LEYTFKISSCVLLSFPSTSKSNPKNYNLRNTHL-QCKCAKLKYT 564
           LE  F +++      PSTS S+P N N R   L +C      YT
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYT 488


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 436 LEYTFKISSCVLLSFPSTSKSNPKNYNLRNTHL-QCKCAKLKYT 564
           LE  F +++      PSTS S+P N N R   L +C      YT
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYT 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,194
Number of Sequences: 27780
Number of extensions: 254118
Number of successful extensions: 655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)