Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_I06
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    45   6e-06
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   1.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.7  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   6.4  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   8.4  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   8.4  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 45.2 bits (102), Expect = 6e-06
 Identities = 21/44 (47%), Positives = 27/44 (61%)
 Frame = +2

Query: 173 KFTIDCTHPAEDSILXVXNFXKYLKEHVKVEGKTNNLSNHVVVA 304
           K+ ID T    D I  V  F KYL + +KV+GKT NL + VVV+
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVS 54



 Score = 35.1 bits (77), Expect = 0.006
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 315 TKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYF 458
           +K+A+ A I FS                  DWLRVV++    YELRY+
Sbjct: 59  SKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 119 LFCQSSDASWAFLATGFFVTASCGK 45
           L  QSS  SW F  T +F+ A C +
Sbjct: 79  LLSQSSLLSWKFFLTAYFIGAFCNQ 103


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 173 KFTIDCTHPAEDSILXVXNFXKYLKEHVKVEGKTNNL 283
           K   DC +  + ++  + N  K + +HV  E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 8   FAVFTVTALHVFVCHNWQ 61
           F    VT +H + CH WQ
Sbjct: 471 FLTIDVTIMHHYACHVWQ 488


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 370 KYFRYLFEKGMSAVIATFVLCXG 302
           K+F+Y+  +G   +   FVLC G
Sbjct: 397 KWFKYVDREGRPLLAMAFVLCFG 419


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -3

Query: 75 RFLC-YCQLWQTNTCRAV 25
          R+LC YCQ+W T+  ++V
Sbjct: 3  RYLCDYCQVWLTHDSQSV 20


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,619
Number of Sequences: 5004
Number of extensions: 25457
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)