Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_I06
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1662 + 28447419-28447666,28448429-28448573                       44   7e-05
03_02_0963 - 12769715-12769859,12770639-12770889                       42   3e-04
12_01_0036 - 299140-299190,300001-300078,300202-300205,300657-30...    27   6.4  
11_01_0038 - 284152-284202,285014-285091,285215-285218,285669-28...    27   6.4  

>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 167 NLKFTIDCTHPAEDSILXVXNFXKYLKEHVKVE-GKTNNLSNHVVV 301
           ++ F IDC+ P ED I+ + +  K+L+E +KV  GK  NL + V V
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTV 65



 Score = 37.5 bits (83), Expect = 0.006
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 312 KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 458
           KTKV +T+D  FS                  DWLRV+A+  D   YELRYF
Sbjct: 69  KTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYF 119


>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 167 NLKFTIDCTHPAEDSILXVXNFXKYLKEHVKVE-GKTNNLSNHVVVA 304
           ++ F IDC  P +D I+ + +  K+L+E +KV  GK  NL   V V+
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVS 67



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 312 KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 458
           KTKV +T+D PFS                  DWLRV+AS  D   YELRYF
Sbjct: 70  KTKVTVTSDGPFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYF 120


>12_01_0036 -
           299140-299190,300001-300078,300202-300205,300657-300757,
           301636-302145,302552-303034,303672-304163
          Length = 572

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 31  STRVRLPQLAVTKKPVAKKAQLASEDWQKRS 123
           ST V +P++     P+  +    SEDW K S
Sbjct: 201 STGVAIPRIGAIPTPLVARISFLSEDWLKSS 231


>11_01_0038 -
           284152-284202,285014-285091,285215-285218,285669-285769,
           286642-287151,287550-288032,288668-289156
          Length = 571

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 31  STRVRLPQLAVTKKPVAKKAQLASEDWQKRS 123
           ST V +P++     P+  +    SEDW K S
Sbjct: 200 STGVAIPRIGAIPTPLVARISFLSEDWLKSS 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,746,149
Number of Sequences: 37544
Number of extensions: 171574
Number of successful extensions: 405
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)