Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_I04
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 175 6e-45
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 174 8e-45
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 29 0.45
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.59
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 1.4
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 28 1.4
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.8
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.2
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 26 4.2
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.5
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.3
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.3
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 25 9.6
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 175 bits (425), Expect = 6e-45
Identities = 78/124 (62%), Positives = 96/124 (77%)
Frame = +2
Query: 284 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 463
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140
Query: 464 SDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDEFDKLREXGRLANDGCIVQYR 643
D +A IEALRR ++KFPG+Q+I VS KWGF++Y RDE+ + R G + DGC ++
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFL 200
Query: 644 PEHG 655
+ G
Sbjct: 201 NKRG 204
Score = 146 bits (354), Expect = 2e-36
Identities = 67/94 (71%), Positives = 74/94 (78%)
Frame = +1
Query: 43 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 222
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 223 SSEALEAGRICCNKYLAKELRKGSVPYPHETSPF 324
+SEALEA RIC NKYL K K S PF
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPF 94
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 174 bits (424), Expect = 8e-45
Identities = 78/124 (62%), Positives = 96/124 (77%)
Frame = +2
Query: 284 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 463
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140
Query: 464 SDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDEFDKLREXGRLANDGCIVQYR 643
D +A IEALRR ++KFPG+Q+I VS KWGF++Y RDE+ + R G + DGC ++
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFL 200
Query: 644 PEHG 655
+ G
Sbjct: 201 NKRG 204
Score = 146 bits (354), Expect = 2e-36
Identities = 67/94 (71%), Positives = 74/94 (78%)
Frame = +1
Query: 43 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 222
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 223 SSEALEAGRICCNKYLAKELRKGSVPYPHETSPF 324
+SEALEA RIC NKYL K K S PF
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPF 94
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 29.5 bits (63), Expect = 0.45
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 456 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQXSGVSQSMNVMSLTSCVXRAAS 614
C L+T C + + SP+++RS Y +G++ S + +T RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.59
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 67 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 243
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 244 G 246
G
Sbjct: 94 G 94
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Frame = +2
Query: 314 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 481
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 482 QVIEALRRAKFKFPGRQKIYV 544
AL++A F PG+ +I V
Sbjct: 159 LAEHALKQAAFHLPGKYEIIV 179
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 196 LVSDEYEQLSSEALEAGRICCNKYLAKELRKGSVPYP 306
LVSDE + + A + G + C+ AKELRK +VP P
Sbjct: 154 LVSDEKKSIF--AAKCGHLFCST-CAKELRKKTVPCP 187
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 124 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 243
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 158 RERPLTTFHCACTWCPTNMNS 220
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 486 SSRLCAVPSSSSPDVKRSTYQXSGVS 563
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 418 STLRLAKRTTHPSLEPISSS 359
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 145 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLAKELRK 288
++ KKRA DD + +VS EYE L SS+ ++ N KY+ K ++K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 243 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 127
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 287 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 391
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 7.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 110 VGVYLIPRSVSSIWV 154
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1
Query: 293 DPFRSSLARYLLQQIR 246
DPFR+ +RY+LQ+I+
Sbjct: 361 DPFRAVQSRYILQEIQ 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,159
Number of Sequences: 5004
Number of extensions: 63173
Number of successful extensions: 218
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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