Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_H23
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 29 0.44
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 28 1.3
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 27 2.3
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 26 4.1
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 26 4.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.2
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 25 7.2
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 25 9.5
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce... 25 9.5
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 25 9.5
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 29.5 bits (63), Expect = 0.44
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 324 TKCIEWRPNDLITIDSDTQDQ 386
+KC++W P D IT+DS Q +
Sbjct: 792 SKCLKWDPKDRITVDSALQHE 812
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 268 GRPTLVFRSTPSCVNKSLYWS 206
G TLVF STP+ + S YWS
Sbjct: 333 GAATLVFESTPAYPDYSRYWS 353
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 614 IGHEYXGVSMLEIERILPDSRFRRELHLLVVTGDA 510
+G + G+SM + R++ DS +R + + V GDA
Sbjct: 324 LGLDKLGISMDKSNRVIMDSEYRTNIPHIRVIGDA 358
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -3
Query: 310 CTMQSIPIELKSETGRPTLVFRSTPSCVNKSLYWSCNSSPELV 182
C+ Q+IPI ET ++ S C +++++ N P+L+
Sbjct: 145 CSSQAIPIVTAYETLGEDGIYTSLDECKSRAIFTDPNLIPKLL 187
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 201 LHDQYKDLFTQDGVLLKTSVGRPVSDFNSIGMLCIVQNADG 323
L +Q KD+ +QDGV +V R N + +C + DG
Sbjct: 165 LLNQLKDILSQDGVFYMVAVAR-----NKLHSICEILQKDG 200
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/64 (21%), Positives = 26/64 (40%)
Frame = +3
Query: 264 RPVSDFNSIGMLCIVQNADGTKCIEWRPNDLITIDSDTQDQEWAVVNTVGRRQRTLXGNI 443
R V + + +G + I W PN+ + + D ++ T RQ T+ NI
Sbjct: 196 RQVLNLSYLGAAGVSAATGAVNSIAWHPNNATRLATAIDDNRNPIILTWDLRQPTVPQNI 255
Query: 444 TSDY 455
+ +
Sbjct: 256 LTGH 259
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 69 FTLFVYIP*NYGVKFNIIRTYVVIVC 146
F L VYI ++FN +TYV++ C
Sbjct: 88 FFLLVYIDAPIMLRFNRYKTYVILQC 113
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 210 QYKDLFTQDGVLLKTSV--GRPVSDFNSIGMLCIVQNADGTKC 332
+ K + + V L T + GRP+++F S L + +N T+C
Sbjct: 107 ELKSIPVLESVHLHTKLIDGRPITNFASFNFLDLAENKHITEC 149
>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 138
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 417 RQRTLXGNITSDYANLRARIIKIPLXDLKTFRITRNNQQMQFSTKPGVWQN--TFYFQHG 590
++R+L + T Y+ +R L ++ RIT + +++ S K ++QN T Y HG
Sbjct: 62 KKRSLIVHCT--YSQVRGPKAARVLSEILRNRITESKEKLSLSQKEKLFQNLPTVYILHG 119
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = -3
Query: 448 DVMLPXRVRCLRPTVLTTAHS*S*VSESMVIKSFGLHSMHLVPSAFCTMQSIP---IELK 278
D+ +P R T TA + S + + S G+HS+ PS++ T +S+ ++
Sbjct: 785 DLKVPESGAIGRVTTRATATTAMDESGNAGMVSSGIHSVSTKPSSYGTRRSLAGSMLQKP 844
Query: 277 SETGRPTLVF 248
++ RP+ +F
Sbjct: 845 TQFSRPSFMF 854
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,966
Number of Sequences: 5004
Number of extensions: 54147
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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