Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H23
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    29   3.2  
05_04_0014 + 17171565-17172102,17172927-17173093                       29   3.2  
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973...    29   4.2  
11_04_0375 + 16933688-16933703,16936291-16937063                       28   5.6  
12_01_0988 - 10039187-10039243,10039356-10039649,10039838-100402...    28   7.4  
07_01_1173 + 11092482-11093465,11093552-11093914                       28   7.4  
06_03_0149 + 17260632-17260647,17263368-17264071                       28   7.4  
01_06_1067 + 34258036-34258051,34264808-34265679                       28   7.4  
01_05_0197 + 19143582-19143618,19143814-19144523                       27   9.8  

>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
            28960097-28960424,28960524-28960661,28960765-28961020,
            28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 422  TDPXR*HNIGLRESSG--AHHKNTPXRFKNVSHHP 520
            T P + H+I + ESS    HH N   + ++  HHP
Sbjct: 962  THPVQEHSISIEESSDHHEHHHNEEHKAEDCGHHP 996


>05_04_0014 + 17171565-17172102,17172927-17173093
          Length = 234

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 366 DSDTQDQEWAVVNTVGRR-QRTLXGNI-TSDYANLRARIIKIPLXDLKTFRITRNNQQMQ 539
           DS +   E+A+  +   R QR + G I T    +LR   +K+    L    +TR   +++
Sbjct: 70  DSSSSTCEFAIEGSYSLRYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLE 129

Query: 540 FS 545
           FS
Sbjct: 130 FS 131


>03_02_0599 -
           9730204-9730314,9730766-9731549,9731631-9732051,
           9732139-9732385,9733730-9733921,9734071-9734204,
           9734316-9734477,9736162-9736200,9737507-9737825
          Length = 802

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 152 NG*LYHHHHVYEFGR*ITRPVQRLVHARRGTSKDQCRSAGL 274
           N  + HHHHV+ +   +T+  Q+     RG+S  QC S+ +
Sbjct: 632 NSFMQHHHHVHYYVHVMTQQ-QQQPSIERGSSDAQCGSSNV 671


>11_04_0375 + 16933688-16933703,16936291-16937063
          Length = 262

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 SIGMLCIVQNADGTKCIEWRPNDLITI 365
           ++G L  +Q  DG+  IEWR N LI +
Sbjct: 6   ALGQLKAIQLLDGSNYIEWRNNVLINL 32


>12_01_0988 -
           10039187-10039243,10039356-10039649,10039838-10040202,
           10042916-10042931
          Length = 243

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 SIGMLCIVQNADGTKCIEWRPNDLITI 365
           ++G L  +Q  DG+  +EWR N LI +
Sbjct: 6   ALGQLKAIQLLDGSNYVEWRNNVLINL 32


>07_01_1173 + 11092482-11093465,11093552-11093914
          Length = 448

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 165 IIIIMSTSSGDELHDQYKDLFTQDGVLLKTSVGRPVSDFNSIGML 299
           + + +S    DE+ D+ +DL  +DG LL+  +G  V+   SI +L
Sbjct: 213 LTVSVSLRRRDEVGDELQDLAVEDGPLLERLLGHDVNWGPSIHVL 257


>06_03_0149 + 17260632-17260647,17263368-17264071
          Length = 239

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 SIGMLCIVQNADGTKCIEWRPNDLITI 365
           ++G L  +Q  DG+  +EWR N LI +
Sbjct: 6   ALGQLKAIQLLDGSNYVEWRNNVLINL 32


>01_06_1067 + 34258036-34258051,34264808-34265679
          Length = 295

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 288 IGMLCIVQNADGTKCIEWRPNDLITI 365
           +G L  +Q  DG+  +EWR N LI +
Sbjct: 5   VGQLKAIQLLDGSNYVEWRNNVLINL 30


>01_05_0197 + 19143582-19143618,19143814-19144523
          Length = 248

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
 Frame = +3

Query: 285 SIGMLCIVQNADGTKCIEWRPNDLITI----DSDTQDQEWAVVNTVGRRQRTLXGNITSD 452
           ++G L  +Q  DG+  +EWR N  I +    D   + Q    +N +G     L       
Sbjct: 13  ALGQLKAIQLLDGSNYVEWRNNVFINLAIREDPPEEPQPAEELNIIGEEYDNLMWAYNKK 72

Query: 453 YAN 461
            AN
Sbjct: 73  LAN 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,755,200
Number of Sequences: 37544
Number of extensions: 343427
Number of successful extensions: 779
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)