Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H23
         (651 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035021-1|AAH35021.1|  657|Homo sapiens RNF190 protein protein.       30   8.2  
AK097506-1|BAC05079.1|  581|Homo sapiens protein ( Homo sapiens ...    30   8.2  
AK093076-1|BAC04044.1|  808|Homo sapiens protein ( Homo sapiens ...    30   8.2  

>BC035021-1|AAH35021.1|  657|Homo sapiens RNF190 protein protein.
          Length = 657

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 413 SQTTDPXR*HNIGLRESSGAHHKNTPXRFKNVSHHP*QPTN 535
           S ++ P R ++ G    SG+  +NTP  F  VSH P Q  N
Sbjct: 575 SSSSSPSRMNSEGHLHVSGSLQENTPFTFFAVSHFPNQNDN 615


>AK097506-1|BAC05079.1|  581|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40187 fis, clone TESTI2018941, moderately
           similar to Mus musculus axotrophin mRNA. ).
          Length = 581

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 413 SQTTDPXR*HNIGLRESSGAHHKNTPXRFKNVSHHP*QPTN 535
           S ++ P R ++ G    SG+  +NTP  F  VSH P Q  N
Sbjct: 388 SSSSSPSRMNSEGHLHVSGSLQENTPFTFFAVSHFPNQNDN 428


>AK093076-1|BAC04044.1|  808|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35757 fis, clone TESTI2004689, moderately
           similar to Mus musculus axotrophin mRNA. ).
          Length = 808

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 413 SQTTDPXR*HNIGLRESSGAHHKNTPXRFKNVSHHP*QPTN 535
           S ++ P R ++ G    SG+  +NTP  F  VSH P Q  N
Sbjct: 575 SSSSSPSRMNSEGHLHVSGSLQENTPFTFFAVSHFPNQNDN 615


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,126,584
Number of Sequences: 237096
Number of extensions: 1893585
Number of successful extensions: 3586
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3585
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)