Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_H22
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 180 9e-46
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 178 4e-45
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 177 5e-45
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 29 4.2
06_03_0290 - 19193707-19193752,19193822-19194090 28 5.6
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 28 7.4
04_01_0596 - 7852529-7855185,7855545-7855581 28 7.4
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 180 bits (438), Expect = 9e-46
Identities = 88/142 (61%), Positives = 111/142 (78%)
Frame = +2
Query: 191 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 370
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 371 WMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEI 550
+VKKWQTLIEA++DV TTDGY+LR+FCIGFT + ++TCYAQ +Q+R I +KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 551 ITRDVTNSELREVVNKLIPDSI 616
+ ++ +L+E+V+K IP+ I
Sbjct: 172 MANQASSCDLKELVSKFIPEVI 193
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = +3
Query: 36 GKIKACRRAVKKVLTKKIVDPFTRKDWYDVKAP 134
GK K + KK KK VDPF +KDWYD+KAP
Sbjct: 4 GKNKRISKG-KKGSKKKTVDPFAKKDWYDIKAP 35
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 178 bits (433), Expect = 4e-45
Identities = 88/142 (61%), Positives = 109/142 (76%)
Frame = +2
Query: 191 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 370
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQGRNVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLR 111
Query: 371 WMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEI 550
+VKKWQTLIEA++DV TTD Y+LR+FCIGFT + ++TCYAQ +Q+R I +KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 551 ITRDVTNSELREVVNKLIPDSI 616
+ + +L+E+V+K IP+ I
Sbjct: 172 MANQASTCDLKELVSKFIPEVI 193
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 36 GKIKACRRAVKKVLTKKIVDPFTRKDWYDVKAP 134
GK K + +K KK VDPF++KDWYD+KAP
Sbjct: 4 GKNKRISKG-RKGSKKKTVDPFSKKDWYDIKAP 35
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 177 bits (432), Expect = 5e-45
Identities = 87/142 (61%), Positives = 110/142 (77%)
Frame = +2
Query: 191 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 370
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 371 WMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEI 550
+VKKWQTLIEA++DV TTD Y+LR+FCIGFT + ++TCYAQ +Q+R I +KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 551 ITRDVTNSELREVVNKLIPDSI 616
+ ++ +L+E+V+K IP+ I
Sbjct: 172 MVNQASSCDLKELVSKFIPEVI 193
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = +3
Query: 36 GKIKACRRAVKKVLTKKIVDPFTRKDWYDVKAP 134
GK K + KK KK VDPF +KDWYD+KAP
Sbjct: 4 GKNKRISKG-KKGSKKKTVDPFAKKDWYDIKAP 35
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 276 DLSASVSACRSARETSKTLPFNPSEAIFVALGTVDKRGADLPLAEH 139
DL A A +T K +P P+ ++VAL + + +++ LAEH
Sbjct: 778 DLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEH 823
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 327 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 416
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 369 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 226
+++ +R+ PW L++ R T +A + +KD SA + +S E K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321
>04_01_0596 - 7852529-7855185,7855545-7855581
Length = 897
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 276 DLSASVSACRSARETSKTLPFNPSEAIFVALGTVDKRGADLPLAEH 139
DL A A T K +P P+ ++VAL + + +++ LAEH
Sbjct: 670 DLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEH 715
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,042,340
Number of Sequences: 37544
Number of extensions: 363887
Number of successful extensions: 963
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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