Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H19
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   183   8e-47
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    29   3.7  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  183 bits (446), Expect = 8e-47
 Identities = 91/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
 Frame = +2

Query: 149 VQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEXDHIVCAAYSHELPRYGVKVGLTNYAA 328
           VQDKNKYNTPKYRLIVR++NKDV  Q+AYS+IE D +V +AYSHELPRYG+KVGLTNYAA
Sbjct: 38  VQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAA 97

Query: 329 AYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPV-DNGPXAFXCYLDVGLARTTTG 505
           AY+TG                          +YNVE   D  P  F   LD+GLARTTTG
Sbjct: 98  AYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAP--FKAVLDIGLARTTTG 155

Query: 506 ARVFXAMXGAVDGGLNVPHSIKRFPXYDAXSKKFNAEVHRAHI 634
           +++F  M G  DGG+NVPHS  RF  +D  SK++NAE HR  I
Sbjct: 156 SKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRI 198



 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +1

Query: 37  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRL 144
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRL 36


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 272  KQRTQYGHXQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 159
            +QR      + + + P   HLC R+++  DI  CYI CS
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 272  KQRTQYGHXQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 159
            +QR      + + + P   HLC R+++  DI  CYI CS
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,155,018
Number of Sequences: 27780
Number of extensions: 246837
Number of successful extensions: 585
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)