Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H19
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.9  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   9.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -3

Query: 356  VLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQ 258
            V+   +   L   +S    HHNV  H    RTQ
Sbjct: 1661 VISDSESGRLDTEMSTWGYHHNVNKHCTIHRTQ 1693


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 199 THNQTIFRCVIFVLVLNKRGVYEHN 125
           T + TI +  I V V+NK  ++EHN
Sbjct: 393 TTSTTISQKHIKVFVVNKDILHEHN 417


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 49  KVVKNKQYFKRYQVKFKRRREGKTD 123
           K  KN+  +++Y+   K R   KT+
Sbjct: 286 KSYKNENSYRKYRETSKERSRDKTE 310


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 206 NKDVTCQVAYSRIEXDHIVCAAYSHELPRYG 298
           ++ VTC +   + + +   CAA  H L + G
Sbjct: 16  HRRVTCDLLSFKGQVNDSACAANCHSLGKAG 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,221
Number of Sequences: 438
Number of extensions: 3150
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)