Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H18
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    62   4e-11
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    55   4e-09
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    25   3.8  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   5.0  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 62.1 bits (144), Expect = 4e-11
 Identities = 30/46 (65%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
 Frame = +2

Query: 140 MPREIKDIKDFLIKARRKDAKSVKIKXNP-ENVKFKVRCSRFLYTL 274
           MPR+I DIK FL  ARRKDA S +IK N  ++VKFK+RCS++LYTL
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTL 46



 Score = 32.3 bits (70), Expect = 0.033
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 276 LITDKEKAXKLKQSLPPGLQVKEV 347
           ++ D +KA KL+QSLPP L V EV
Sbjct: 47  VVADAKKAEKLRQSLPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 55.2 bits (127), Expect = 4e-09
 Identities = 27/46 (58%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
 Frame = +2

Query: 140 MPREIKDIKDFLIKARRKDAKSVKIKXNPEN-VKFKVRCSRFLYTL 274
           MPR++ DIK FL  A R DA S ++K N    VKFK+RCSR+LYTL
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTL 46



 Score = 32.7 bits (71), Expect = 0.025
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 276 LITDKEKAXKLKQSLPPGLQVKEV 347
           ++ D +KA KL+QSLPP L V EV
Sbjct: 47  VVADAKKAEKLRQSLPPALTVTEV 70


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 4   CFSFCYQISFHP*IKSAVVQVLCANFFR*KCXF 102
           C S  +Q+  HP I  A VQ + A +F  KC +
Sbjct: 213 CNSPYHQLCHHPPIDDATVQDVDAEWFCMKCQY 245


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 123 NYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RXTLRMSSSRF 248
           N   ST + +  ++K+F  R   +TP ++K R +L+ S   F
Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,171,544
Number of Sequences: 5004
Number of extensions: 18668
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)