Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H18
         (435 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.      80   3e-15
BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38 p...    80   3e-15
AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38 p...    46   6e-05

>Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.
          Length = 70

 Score = 80.2 bits (189), Expect = 3e-15
 Identities = 36/45 (80%), Positives = 42/45 (93%)
 Frame = +2

Query: 140 MPREIKDIKDFLIKARRKDAKSVKIKXNPENVKFKVRCSRFLYTL 274
           MPR+I++IKDFL+ ARRKDAKSVKIK N +NVKFKVRCSR+LYTL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTL 45



 Score = 46.0 bits (104), Expect = 6e-05
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = +3

Query: 276 LITDKEKAXKLKQSLPPGLQVKEVK 350
           +ITDKEKA KLKQSLPPGL VKE+K
Sbjct: 46  VITDKEKAEKLKQSLPPGLAVKELK 70


>BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38
           protein.
          Length = 70

 Score = 80.2 bits (189), Expect = 3e-15
 Identities = 36/45 (80%), Positives = 42/45 (93%)
 Frame = +2

Query: 140 MPREIKDIKDFLIKARRKDAKSVKIKXNPENVKFKVRCSRFLYTL 274
           MPR+I++IKDFL+ ARRKDAKSVKIK N +NVKFKVRCSR+LYTL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTL 45



 Score = 46.0 bits (104), Expect = 6e-05
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = +3

Query: 276 LITDKEKAXKLKQSLPPGLQVKEVK 350
           +ITDKEKA KLKQSLPPGL VKE+K
Sbjct: 46  VITDKEKAEKLKQSLPPGLAVKELK 70


>AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38
           protein.
          Length = 37

 Score = 46.0 bits (104), Expect = 6e-05
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = +3

Query: 276 LITDKEKAXKLKQSLPPGLQVKEVK 350
           +ITDKEKA KLKQSLPPGL VKE+K
Sbjct: 13  VITDKEKAEKLKQSLPPGLAVKELK 37



 Score = 28.7 bits (61), Expect = 9.1
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 239 FKVRCSRFLYTL 274
           FKVRCSR+LYTL
Sbjct: 1   FKVRCSRYLYTL 12


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,438,169
Number of Sequences: 237096
Number of extensions: 608390
Number of successful extensions: 943
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)