Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H18
         (435 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075491-1|AAL68301.1|   70|Drosophila melanogaster RE42506p pro...    80   1e-15
AE013599-14|EAA46007.1|   70|Drosophila melanogaster CG18001-PA ...    80   1e-15
U31351-1|AAB97618.1|  810|Drosophila melanogaster protein ( Dros...    27   8.3  
AF044287-1|AAC01743.1|  810|Drosophila melanogaster delta adapti...    27   8.3  

>AY075491-1|AAL68301.1|   70|Drosophila melanogaster RE42506p
           protein.
          Length = 70

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/45 (77%), Positives = 40/45 (88%)
 Frame = +2

Query: 140 MPREIKDIKDFLIKARRKDAKSVKIKXNPENVKFKVRCSRFLYTL 274
           MPREIK++KDFL KARR DA++VKIK NP N KFK+RCSRFLYTL
Sbjct: 1   MPREIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTL 45



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/25 (80%), Positives = 23/25 (92%)
 Frame = +3

Query: 276 LITDKEKAXKLKQSLPPGLQVKEVK 350
           ++ DKEKA K+KQSLPPGLQVKEVK
Sbjct: 46  VVQDKEKADKIKQSLPPGLQVKEVK 70


>AE013599-14|EAA46007.1|   70|Drosophila melanogaster CG18001-PA
           protein.
          Length = 70

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/45 (77%), Positives = 40/45 (88%)
 Frame = +2

Query: 140 MPREIKDIKDFLIKARRKDAKSVKIKXNPENVKFKVRCSRFLYTL 274
           MPREIK++KDFL KARR DA++VKIK NP N KFK+RCSRFLYTL
Sbjct: 1   MPREIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTL 45



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/25 (80%), Positives = 23/25 (92%)
 Frame = +3

Query: 276 LITDKEKAXKLKQSLPPGLQVKEVK 350
           ++ DKEKA K+KQSLPPGLQVKEVK
Sbjct: 46  VVQDKEKADKIKQSLPPGLQVKEVK 70


>U31351-1|AAB97618.1|  810|Drosophila melanogaster protein (
           Drosophila melanogastergarnet mRNA, complete cds. ).
          Length = 810

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 1   VCFSFCYQISFHP*IKSAVVQVLCANFFR*KCXFLL 108
           +C+ +CY+   H  +  A+V V C + +R  C  L+
Sbjct: 122 ICYRYCYRCCCHCQLLFAIVVVQCLSLYR--CLLLI 155


>AF044287-1|AAC01743.1|  810|Drosophila melanogaster delta adaptin
           subunit of AP-3 protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 1   VCFSFCYQISFHP*IKSAVVQVLCANFFR*KCXFLL 108
           +C+ +CY+   H  +  A+V V C + +R  C  L+
Sbjct: 122 ICYRYCYRCCCHCQLLFAIVVVQCLSLYR--CLLLI 155


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,454,345
Number of Sequences: 53049
Number of extensions: 190051
Number of successful extensions: 332
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1376136036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)