Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_H15
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 94 1e-20
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 50 2e-07
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 43 3e-05
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 36 0.003
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 29 0.55
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 1.3
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 1.3
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 2.9
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 5.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 6.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 9.0
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 25 9.0
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 9.0
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 9.0
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 93.9 bits (223), Expect = 1e-20
Identities = 43/99 (43%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +2
Query: 128 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTGHFARDCXEX 304
S P + CYKC R GH AR+C G S G +R C+ C GH ARDC
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 305 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 421
+CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 135 V-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 90.2 bits (214), Expect = 2e-19
Identities = 45/121 (37%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCXEXADR--CYRCNG 331
CY C GH ARECT+G + C+ CN+TGH A +C E CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 332 TGHIARECAQSPDE---PSCYNCNKTGHIARNCPXGGXXS--------ATQTCYNCNKSG 478
GH+ R+C SP+ CY C + GHIAR+C G S + CY C G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYG 125
Query: 479 H 481
H
Sbjct: 126 H 126
Score = 83.4 bits (197), Expect = 2e-17
Identities = 51/138 (36%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Frame = +2
Query: 152 SVCYKCNRTGHFARECTQ------------GGVVSRD---SGFNRQREKCFKCNRTGHFA 286
S+CY CN+TGH A ECT+ G + RD S RQ +C+KC R GH A
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIA 95
Query: 287 RDCXEXADR-------------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPX 427
RDC + CY C GH AR+C CY+C K GH + C
Sbjct: 96 RDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG---VKCYSCGKIGHRSFECQQ 152
Query: 428 GGXXSATQTCYNCNKSGH 481
S Q CY CN+ GH
Sbjct: 153 A---SDGQLCYKCNQPGH 167
Score = 83.0 bits (196), Expect = 2e-17
Identities = 32/81 (39%), Positives = 42/81 (51%)
Frame = +2
Query: 239 RQREKCFKCNRTGHFARDCXEXADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 418
R +C+ C GH AR+C + + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTKGSI-CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 419 CPXGGXXSATQTCYNCNKSGH 481
CP CY C + GH
Sbjct: 73 CPSSPNPRQGAECYKCGRVGH 93
Score = 45.6 bits (103), Expect = 4e-06
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +2
Query: 374 PSCYNCNKTGHIARNCPXGGXXSATQTCYNCNKSGHXSA 490
P CYNC + GH AR C G CYNCN++GH ++
Sbjct: 17 PRCYNCGENGHQARECTKGSI------CYNCNQTGHKAS 49
Score = 31.9 bits (69), Expect = 0.059
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 140 AMSSSVCYKCNRTGHFARECT 202
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 50.4 bits (115), Expect = 2e-07
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Frame = +2
Query: 239 RQREK-CFKCNRTGHFARDCXEXADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 400
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 401 GHIARNC 421
GH++ C
Sbjct: 133 GHLSGQC 139
Score = 44.8 bits (101), Expect = 8e-06
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Frame = +2
Query: 158 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCXEXAD----RCYRC 325
C+ C + GH ++C + ++D+ CF+C H C + +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKDNV-----SICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 326 NGTGHIARECAQSPD--EPS---CYNCNKTGHIARNC 421
+ GH++ +C Q+P P C C+ H+A++C
Sbjct: 130 HENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166
Score = 36.3 bits (80), Expect = 0.003
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Frame = +2
Query: 152 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCXE-------XAD 310
S+C++C H C++ G + + KCF C+ GH + C +
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSGQCEQNPKGLYPKGG 151
Query: 311 RCYRCNGTGHIARECAQ 361
C C+ H+A++C Q
Sbjct: 152 CCKFCSSVHHLAKDCDQ 168
Score = 30.3 bits (65), Expect = 0.18
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = +2
Query: 347 RECAQSPDEPSCYNCNKTGHIARNCPXGGXXSATQTCYNCNKSGH 481
R Q + C+ C + GHI ++CP C+ C H
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEH 110
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 128 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCXE 301
SK + + C+ C+ GH + +C Q G + C C+ H A+DC +
Sbjct: 116 SKKGPLKFAKCFICHENGHLSGQCEQ-----NPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 42.7 bits (96), Expect = 3e-05
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Frame = +2
Query: 254 CFKCNRTGHFARDCXEXADRCYRCNGTG-HIARECAQSPDEPSCYNCNKTGHIARNCPXG 430
C C GH ++DC C C HI+ C P C NC GHIA C
Sbjct: 89 CHNCKGNGHISKDCPHVL--CTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARCSE- 142
Query: 431 GXXSATQTCYNCNKSGHXSA 490
+ C C+ H S+
Sbjct: 143 PRKRGPRVCRTCHTDTHTSS 162
Score = 38.7 bits (86), Expect = 5e-04
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Frame = +2
Query: 149 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTGHFARDCXEXAD 310
S VC+ C GH +++C T G + S +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 311 R----CYRCNGTGHIAREC 355
R C C+ H + C
Sbjct: 146 RGPRVCRTCHTDTHTSSTC 164
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +2
Query: 242 QREKCFKCNRTGHFARDCXEXADR-----CYRCNGTGHIARECAQSPDEP 376
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 34.7 bits (76), Expect = 0.008
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +2
Query: 314 CYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCP 424
C C GH +C + + C +C GHIAR+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 29.9 bits (64), Expect = 0.24
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +2
Query: 380 CYNCNKTGHIARNCPXGGXXSATQTCYNCNKSGH 481
C NC GH +CP + C +C GH
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGH 344
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 149 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 295
+ VC C GH +C + R + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCPE-----RIN--HTMNIVCRHCGSIGHIARDC 349
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 28.7 bits (61), Expect = 0.55
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 134 PIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 289
P A +V K N GH E G V +S + K + +R G F+R
Sbjct: 384 PKAAPKAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSR 435
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 152 SVCYKCNRTGHFAREC 199
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 278 HFARDCXEXADRCYRCNGTGHIAREC 355
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 152 SVCYKCNRTGHFAREC 199
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 278 HFARDCXEXADRCYRCNGTGHIAREC 355
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +2
Query: 347 RECAQSPDEPS-----CYNCNKTGHIARNCP 424
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 254 CFKCNRTGHFARDCXEXADRCY----RCNGTGHIARECAQSPDEPS 379
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 25.4 bits (53), Expect = 5.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +2
Query: 155 VCYKCNRTGHFAREC 199
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 236 NRQREKCFKCNRTGHFARDCXEXA 307
+RQ KC +C RT + +++C A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 335 QCRYICSNGQPXXCNPSQSVLCGCT 261
+C+Y C G C+ + ++ C CT
Sbjct: 488 RCKYKCHLGSCGTCSETLTIPCRCT 512
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 97 LH*CLKCSRIFKTDRN 144
LH C+ C IF DRN
Sbjct: 425 LHWCINCRSIFSGDRN 440
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = +2
Query: 359 QSPDEPSCYNCNKTGHIARN--CPXGG 433
+ P C NC + GH+ N CP G
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFG 966
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = -1
Query: 425 RDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRYICSNGQPXXCNPSQSVLC 270
+DSS PSCCS + S + + + CS + C+ + C
Sbjct: 229 KDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCC 280
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 197 IRARNARSGCTCSKRLNSLRSVLKILEHLRH*CNDRSTINYPMNLQI 57
+R+R S KR + L+ V LEHL+H + ++N + ++I
Sbjct: 411 LRSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRI 457
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,166
Number of Sequences: 5004
Number of extensions: 31271
Number of successful extensions: 140
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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