Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H13
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   308   4e-85
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   308   4e-85
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   308   4e-85
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    31   0.11 
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   7.2  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  308 bits (757), Expect = 4e-85
 Identities = 140/204 (68%), Positives = 168/204 (82%)
 Frame = +2

Query: 41  MGRVIRAQRKGAGSVFVSHTKXRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 220
           MGRVIRAQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 221 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMPVGAMPEGTIVCNLEXKM 400
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L  GNV+PVG MPEGTI+ N+E K 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 401 GDXGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 580
           GD G L R+SGN+  ++GH+ D  +T VKLPSGAKKV+PSS RG+VGIVAGGGRID P+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179

Query: 581 KAGXAYHKYKVKRNCWPYVRGVAM 652
           KAG A+HKY+VKRNCWP  RGVAM
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRGVAM 203


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  308 bits (757), Expect = 4e-85
 Identities = 140/204 (68%), Positives = 168/204 (82%)
 Frame = +2

Query: 41  MGRVIRAQRKGAGSVFVSHTKXRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 220
           MGRVIRAQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 221 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMPVGAMPEGTIVCNLEXKM 400
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L  GNV+PVG MPEGTI+ N+E K 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 401 GDXGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 580
           GD G L R+SGN+  ++GH+ D  +T VKLPSGAKKV+PSS RG+VGIVAGGGRID P+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179

Query: 581 KAGXAYHKYKVKRNCWPYVRGVAM 652
           KAG A+HKY+VKRNCWP  RGVAM
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRGVAM 203


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  308 bits (757), Expect = 4e-85
 Identities = 140/204 (68%), Positives = 168/204 (82%)
 Frame = +2

Query: 41  MGRVIRAQRKGAGSVFVSHTKXRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 220
           MGRVIRAQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 221 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMPVGAMPEGTIVCNLEXKM 400
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L  GNV+PVG MPEGTI+ N+E K 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 401 GDXGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 580
           GD G L R+SGN+  ++GH+ D  +T VKLPSGAKKV+PSS RG+VGIVAGGGRID P+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179

Query: 581 KAGXAYHKYKVKRNCWPYVRGVAM 652
           KAG A+HKY+VKRNCWP  RGVAM
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRGVAM 203


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -1

Query: 552 PATIPTMPLLLDGRTFLAPDGSFTXVRLASGLCPITVAKFPEARARRPXSPIXXSRL 382
           PAT+P          F  P   F   +L SGL    V+ +P+   +   +P   SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 550 WRWTY*XTYFESWXGIPQVQG 612
           WR+ Y  T+  SW  +P VQG
Sbjct: 120 WRFLYWLTFVLSWIILPFVQG 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,298
Number of Sequences: 5004
Number of extensions: 51390
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)