SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H13
         (654 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z28407-1|CAA82248.1|  257|Homo sapiens ribosomal protein L8 prot...   343   4e-94
CR457046-1|CAG33327.1|  257|Homo sapiens RPL8 protein.                343   4e-94
BT007379-1|AAP36043.1|  257|Homo sapiens ribosomal protein L8 pr...   343   4e-94
BC093064-1|AAH93064.1|  257|Homo sapiens ribosomal protein L8 pr...   343   4e-94
BC013104-1|AAH13104.1|  257|Homo sapiens ribosomal protein L8 pr...   343   4e-94
BC012197-1|AAH12197.1|  257|Homo sapiens ribosomal protein L8 pr...   343   4e-94
BC000077-1|AAH00077.1|  257|Homo sapiens ribosomal protein L8 pr...   343   4e-94
AB061821-1|BAB79459.1|  257|Homo sapiens ribosomal protein L8 pr...   343   4e-94
BC000047-1|AAH00047.2|  211|Homo sapiens RPL8 protein protein.        270   3e-72
AB007168-1|BAA25829.1|  130|Homo sapiens ribosomal protein L8 pr...   215   1e-55
AF132956-1|AAD27731.1|  353|Homo sapiens CGI-22 protein protein.       41   0.004
BC020212-1|AAH20212.1|  305|Homo sapiens mitochondrial ribosomal...    40   0.006
BC013685-1|AAH13685.1|  305|Homo sapiens mitochondrial ribosomal...    40   0.006
AL355385-2|CAI13780.1|  302|Homo sapiens protein ( Human DNA seq...    38   0.031
AK124779-1|BAC85944.1|  163|Homo sapiens protein ( Homo sapiens ...    30   8.3  

>Z28407-1|CAA82248.1|  257|Homo sapiens ribosomal protein L8
           protein.
          Length = 257

 Score =  343 bits (842), Expect = 4e-94
 Identities = 157/204 (76%), Positives = 176/204 (86%)
 Frame = +2

Query: 41  MGRVIRAQRKGAGSVFVSHTKXRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 220
           MGRVIR QRKGAGSVF +H K RKGA +LR++ +AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 221 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMPVGAMPEGTIVCNLEXKM 400
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+PVG MPEGTIVC LE K 
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 120

Query: 401 GDXGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 580
           GD G+LARASGN+ATVI HNP+ K+T VKLPSG+KKV+ S+NR +VG+VAGGGRID PIL
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180

Query: 581 KAGXAYHKYKVKRNCWPYVRGVAM 652
           KAG AYHKYK KRNCWP VRGVAM
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAM 204


>CR457046-1|CAG33327.1|  257|Homo sapiens RPL8 protein.
          Length = 257

 Score =  343 bits (842), Expect = 4e-94
 Identities = 157/204 (76%), Positives = 176/204 (86%)
 Frame = +2

Query: 41  MGRVIRAQRKGAGSVFVSHTKXRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 220
           MGRVIR QRKGAGSVF +H K RKGA +LR++ +AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 221 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMPVGAMPEGTIVCNLEXKM 400
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+PVG MPEGTIVC LE K 
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 120

Query: 401 GDXGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 580
           GD G+LARASGN+ATVI HNP+ K+T VKLPSG+KKV+ S+NR +VG+VAGGGRID PIL
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180

Query: 581 KAGXAYHKYKVKRNCWPYVRGVAM 652
           KAG AYHKYK KRNCWP VRGVAM
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAM 204


>BT007379-1|AAP36043.1|  257|Homo sapiens ribosomal protein L8
           protein.
          Length = 257

 Score =  343 bits (842), Expect = 4e-94
 Identities = 157/204 (76%), Positives = 176/204 (86%)
 Frame = +2

Query: 41  MGRVIRAQRKGAGSVFVSHTKXRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 220
           MGRVIR QRKGAGSVF +H K RKGA +LR++ +AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 221 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMPVGAMPEGTIVCNLEXKM 400
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+PVG MPEGTIVC LE K 
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKP 120

Query: 401 GDXGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 580
           GD G+LARASGN+ATVI HNP+ K+T VKLPSG+KKV+ S+NR +VG+VAGGGRID PIL
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180

Query: 581 KAGXAYHKYKVKRNCWPYVRGVAM 652
           KAG AYHKYK KRNCWP VRGVAM
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAM 204


>BC093064-1|AAH93064.1|  257|Homo sapiens ribosomal protein L8
           protein.
          Length = 257

 Score =  343 bits (842), Expect = 4e-94
 Identities = 157/204 (76%), Positives = 176/204 (86%)
 Frame = +2

Query: 41  MGRVIRAQRKGAGSVFVSHTKXRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 220
           MGRVIR QRKGAGSVF +H K RKGA +LR++ +AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 221 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMPVGAMPEGTIVCNLEXKM 400
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+PVG MPEGTIVC LE K 
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 120

Query: 401 GDXGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 580
           GD G+LARASGN+ATVI HNP+ K+T VKLPSG+KKV+ S+NR +VG+VAGGGRID PIL
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180

Query: 581 KAGXAYHKYKVKRNCWPYVRGVAM 652
           KAG AYHKYK KRNCWP VRGVAM
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAM 204


>BC013104-1|AAH13104.1|  257|Homo sapiens ribosomal protein L8
           protein.
          Length = 257

 Score =  343 bits (842), Expect = 4e-94
 Identities = 157/204 (76%), Positives = 176/204 (86%)
 Frame = +2

Query: 41  MGRVIRAQRKGAGSVFVSHTKXRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 220
           MGRVIR QRKGAGSVF +H K RKGA +LR++ +AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 221 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMPVGAMPEGTIVCNLEXKM 400
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+PVG MPEGTIVC LE K 
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKP 120

Query: 401 GDXGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 580
           GD G+LARASGN+ATVI HNP+ K+T VKLPSG+KKV+ S+NR +VG+VAGGGRID PIL
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180

Query: 581 KAGXAYHKYKVKRNCWPYVRGVAM 652
           KAG AYHKYK KRNCWP VRGVAM
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAM 204


>BC012197-1|AAH12197.1|  257|Homo sapiens ribosomal protein L8
           protein.
          Length = 257

 Score =  343 bits (842), Expect = 4e-94
 Identities = 157/204 (76%), Positives = 176/204 (86%)
 Frame = +2

Query: 41  MGRVIRAQRKGAGSVFVSHTKXRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 220
           MGRVIR QRKGAGSVF +H K RKGA +LR++ +AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 221 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMPVGAMPEGTIVCNLEXKM 400
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+PVG MPEGTIVC LE K 
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKP 120

Query: 401 GDXGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 580
           GD G+LARASGN+ATVI HNP+ K+T VKLPSG+KKV+ S+NR +VG+VAGGGRID PIL
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180

Query: 581 KAGXAYHKYKVKRNCWPYVRGVAM 652
           KAG AYHKYK KRNCWP VRGVAM
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAM 204


>BC000077-1|AAH00077.1|  257|Homo sapiens ribosomal protein L8
           protein.
          Length = 257

 Score =  343 bits (842), Expect = 4e-94
 Identities = 157/204 (76%), Positives = 176/204 (86%)
 Frame = +2

Query: 41  MGRVIRAQRKGAGSVFVSHTKXRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 220
           MGRVIR QRKGAGSVF +H K RKGA +LR++ +AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 221 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMPVGAMPEGTIVCNLEXKM 400
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+PVG MPEGTIVC LE K 
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 120

Query: 401 GDXGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 580
           GD G+LARASGN+ATVI HNP+ K+T VKLPSG+KKV+ S+NR +VG+VAGGGRID PIL
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180

Query: 581 KAGXAYHKYKVKRNCWPYVRGVAM 652
           KAG AYHKYK KRNCWP VRGVAM
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAM 204


>AB061821-1|BAB79459.1|  257|Homo sapiens ribosomal protein L8
           protein.
          Length = 257

 Score =  343 bits (842), Expect = 4e-94
 Identities = 157/204 (76%), Positives = 176/204 (86%)
 Frame = +2

Query: 41  MGRVIRAQRKGAGSVFVSHTKXRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAV 220
           MGRVIR QRKGAGSVF +H K RKGA +LR++ +AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 221 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMPVGAMPEGTIVCNLEXKM 400
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+PVG MPEGTIVC LE K 
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 120

Query: 401 GDXGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 580
           GD G+LARASGN+ATVI HNP+ K+T VKLPSG+KKV+ S+NR +VG+VAGGGRID PIL
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180

Query: 581 KAGXAYHKYKVKRNCWPYVRGVAM 652
           KAG AYHKYK KRNCWP VRGVAM
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAM 204


>BC000047-1|AAH00047.2|  211|Homo sapiens RPL8 protein protein.
          Length = 211

 Score =  270 bits (662), Expect = 3e-72
 Identities = 123/158 (77%), Positives = 136/158 (86%)
 Frame = +2

Query: 179 DIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMPVGA 358
           DIIHDPGRGAPLA V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+PVG 
Sbjct: 1   DIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGT 60

Query: 359 MPEGTIVCNLEXKMGDXGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMV 538
           MPEGTIVC LE K GD G+LARASGN+ATVI HNP+ K+T VKLPSG+KKV+ S+NR +V
Sbjct: 61  MPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVV 120

Query: 539 GIVAGGGRIDXPILKAGXAYHKYKVKRNCWPYVRGVAM 652
           G+VAGGGRID PILKAG AYHKYK KRNCWP VRGVAM
Sbjct: 121 GVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAM 158


>AB007168-1|BAA25829.1|  130|Homo sapiens ribosomal protein L8
           protein.
          Length = 130

 Score =  215 bits (525), Expect = 1e-55
 Identities = 99/130 (76%), Positives = 111/130 (85%)
 Frame = +2

Query: 53  IRAQRKGAGSVFVSHTKXRKGAPKLRSLXYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 232
           IR QRKGAGSVF +H K RKGA +LR++ +AERHGYIKG+VKDIIHDPGRGAPLA V FR
Sbjct: 1   IRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFR 60

Query: 233 DPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMPVGAMPEGTIVCNLEXKMGDXG 412
           DPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+PVG MPEGTIVC LE K GD G
Sbjct: 61  DPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRG 120

Query: 413 RLARASGNFA 442
           +LARASGN+A
Sbjct: 121 KLARASGNYA 130


>AF132956-1|AAD27731.1|  353|Homo sapiens CGI-22 protein protein.
          Length = 353

 Score = 40.7 bits (91), Expect = 0.004
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 5/152 (3%)
 Frame = +2

Query: 149 RHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFV----YCGK 316
           + G  +  V  + +DP R A +A+V         +RK   IA E +  G  +    + G+
Sbjct: 118 KSGPFEEKVIQVRYDPCRSADIALV------AGGSRKRWIIATENMQAGDTILNSNHIGR 171

Query: 317 KATL-EXGNVMPVGAMPEGTIVCNLEXKMGDXGRLARASGNFATVIGHNPDAKRTXVKLP 493
            A     G+  P+GA+P GT++ N+E + G   +  RA+G    ++        + ++LP
Sbjct: 172 MAVAAREGDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLL--RKVNGHSIIQLP 229

Query: 494 SGAKKVLPSSNRGMVGIVAGGGRIDXPILKAG 589
           S  +  +  +    VG V+        I KAG
Sbjct: 230 SKRQMQVLETCVATVGRVSNVDHNKRVIGKAG 261


>BC020212-1|AAH20212.1|  305|Homo sapiens mitochondrial ribosomal
           protein L2 protein.
          Length = 305

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
 Frame = +2

Query: 149 RHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFV----YCGK 316
           + G  +  V  + +DP R A +A+V         +RK   IA E +  G  +    + G+
Sbjct: 118 KSGPFEEKVIQVRYDPCRSADIALV------AGGSRKRWIIATENMQAGDTILNSNHIGR 171

Query: 317 KATL-EXGNVMPVGAMPEGTIVCNLEXKMGDXGRLARASGNFATVI 451
            A     G+  P+GA+P GT++ N+E + G   +  RA+G    ++
Sbjct: 172 MAVAAREGDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLL 217


>BC013685-1|AAH13685.1|  305|Homo sapiens mitochondrial ribosomal
           protein L2 protein.
          Length = 305

 Score = 40.3 bits (90), Expect = 0.006
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
 Frame = +2

Query: 149 RHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFV----YCGK 316
           + G  +  V  + +DP R A +A+V         +RK   IA E +  G  +    + G+
Sbjct: 118 KSGPFEEKVIQVRYDPCRSADIALV------AGGSRKRWIIATENMQAGDTILNSNHIGR 171

Query: 317 KATL-EXGNVMPVGAMPEGTIVCNLEXKMGDXGRLARASGNFATVI 451
            A     G+  P+GA+P GT++ N+E + G   +  RA+G    ++
Sbjct: 172 MAVAAREGDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLL 217


>AL355385-2|CAI13780.1|  302|Homo sapiens protein ( Human DNA
           sequence from clone RP11-387M24 on chromosome 6 Contains
            the 5' end of a gene for a novel protein (KIAA0076
           KIAA0708), the  ).
          Length = 302

 Score = 37.9 bits (84), Expect = 0.031
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = +2

Query: 251 TRKELFIAPEGLYTGQFV----YCGKKATL-EXGNVMPVGAMPEGTIVCNLEXKMGDXGR 415
           +RK   IA E +  G  +    + G+ A     G+  P+GA+P GT++ N+E + G   +
Sbjct: 143 SRKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAHPLGALPVGTLINNVESEPGRGAQ 202

Query: 416 LARASGNFATVI 451
             RA+G    ++
Sbjct: 203 YIRAAGTCGVLL 214


>AK124779-1|BAC85944.1|  163|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42789 fis, clone BRAWH3007221. ).
          Length = 163

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 621 LRLTLYLWYAX-PAFKIGXSIRPPPATIPTMPL 526
           L LT +L+ A  P F++  S+ PPP ++P  P+
Sbjct: 87  LFLTHFLYLAASPCFRLSVSLFPPPLSLPRSPI 119


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,328,680
Number of Sequences: 237096
Number of extensions: 2128062
Number of successful extensions: 3907
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3906
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -