Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H12
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...   101   9e-23
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    27   2.3  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.2  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   9.5  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   9.5  

>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score =  101 bits (242), Expect = 9e-23
 Identities = 56/137 (40%), Positives = 73/137 (53%)
 Frame = +1

Query: 106 LYCAISNXXXXXXXXSPTSGAVFERRIIXKYIIXNGVDPINGKELXVEDLXXXXXXXXXX 285
           ++C+IS         S  SG V+E+R+I + I     DP+  +E  +EDL          
Sbjct: 1   MFCSISGETPKEPVISRVSGNVYEKRLIEQVIRETSKDPVTQQECTLEDLVPVKVPDFVR 60

Query: 286 XXXXSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAXCRVIARLTK 465
               SATS+PA L   Q+EWD++ L  F  R+ L   +QELS ALY  DA  RVI+RLTK
Sbjct: 61  PRPPSATSLPALLSLFQEEWDSVALEQFELRRNLTETKQELSTALYSLDAALRVISRLTK 120

Query: 466 EVTAAREALATLKPQAG 516
           E   AREALA      G
Sbjct: 121 ERDEAREALAKFSDNIG 137


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 169 VFERRIIXKYIIXNGVDPINGKELXVEDL 255
           +F+ R I  ++  +G +PING++  + DL
Sbjct: 67  IFDFRFIVPWLRKHGTNPINGQKASMSDL 95


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +3

Query: 438 VSCDSPTHKGGD-GGARGPRHTETAGR---HCSTPSTTPHGGVS 557
           V  D+P     D  G  GP+ T++      H STPS  P GG S
Sbjct: 229 VGRDAPAAAATDLSGIIGPQMTKSPASSVTHFSTPSMLPIGGTS 272


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/76 (25%), Positives = 29/76 (38%)
 Frame = +3

Query: 312 PCHTEKHAR*VGRPDVTCLHTETAVADC*TRIKSCTVPTRRXVSCDSPTHKGGDGGARGP 491
           P   + ++R     +V  LHT +A         SC+          + T  GG+  A G 
Sbjct: 148 PFGNDSNSRPHSLKNVEKLHTFSAPYTISEETPSCSTENDSLPLTATHTITGGEDAATGA 207

Query: 492 RHTETAGRHCSTPSTT 539
             T T   H +T + T
Sbjct: 208 AVTNTTTTHITTSTNT 223


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 104 LSIVRY--QMKFPKYQWYHLRQELCLKG 181
           +S+V Y  Q+ FPK  W H+   L L G
Sbjct: 664 VSVVVYLLQISFPKSSWKHVNPALLLGG 691


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 181 SFQTQLLT*VIPLVLRELHLISHNRETFCL*YHFKGLK 68
           S Q +L   + P VL++LHL + NR+     ++F G K
Sbjct: 481 SVQEELTNTLEPSVLKQLHLANPNRQAAS--FNFSGPK 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,654
Number of Sequences: 5004
Number of extensions: 45224
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)