Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H12
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...   153   8e-38
Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical pr...    31   0.94 
U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical pr...    31   0.94 
AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical ...    29   2.9  
U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    28   5.0  
Z93393-15|CAE54926.1|  347|Caenorhabditis elegans Hypothetical p...    27   8.7  

>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score =  153 bits (372), Expect = 8e-38
 Identities = 84/185 (45%), Positives = 110/185 (59%), Gaps = 1/185 (0%)
 Frame = +1

Query: 100 MSLYCAISNXXXXXXXXSPTSGAVFERRIIXKYIIXNGVDPINGKELXVEDLXXXXXXXX 279
           MS  C IS         S  SG +F+RR+I K+I  NG DPI+  EL  + L        
Sbjct: 1   MSFVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGGT 60

Query: 280 XXXXXX-SATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAXCRVIAR 456
                  S TSIP+ LK +QDEWD +ML++F+ RQQLQ ARQELSH+LYQHDA CRVI+R
Sbjct: 61  GSAPRNVSGTSIPSLLKMLQDEWDTVMLNSFSLRQQLQIARQELSHSLYQHDAACRVISR 120

Query: 457 LTKEVTAAREALATLKPQAGIAAPQAPHPTEXXXXXXXXXXXXXDVVSRLQERATALTQE 636
           L+KE+TAAREAL+TLKP             E              ++++L+E++ +LT E
Sbjct: 121 LSKELTAAREALSTLKPHTSAKVDDDVSIDESEDQQGLSEA----ILAKLEEKSKSLTAE 176

Query: 637 RKRRG 651
           RK+RG
Sbjct: 177 RKQRG 181


>Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical
           protein C15C6.3 protein.
          Length = 541

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = +3

Query: 402 RIKSCTVPTRRXVSCDSPTHKGGDGGARGPRHTETAGRHCSTPSTTPHGGVSRQCGSNRH 581
           R+K  T+P  R +S DS +  G     R  R      R  +  +++  G  S++    +H
Sbjct: 229 RLKIATIPGARDISTDS-SDAGSSSRRRRARRRSHRSRSRTYSTSSDRGSSSKRSRQQQH 287

Query: 582 VCGRGVSSAGARHRTHAGTEAP 647
           +  +  SS   R R+ +    P
Sbjct: 288 MKRKTPSSPSRRSRSRSPPPYP 309


>U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical
           protein T10E9.4 protein.
          Length = 649

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +3

Query: 444 CDSPTHKGGDGGAR---GPRHTETAGRHCSTPSTTPHGGVSRQCGSNRHVC 587
           CD  T++ G  G R   G   TE  G  CS+      G V      N+HVC
Sbjct: 489 CDPDTNRVGILGKRHLTGEERTEVKGSACSSNKDCKSGTVCVYVNINKHVC 539


>AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical
           protein Y67D8C.2 protein.
          Length = 460

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 264 QNTTYSKAKTSKCHINPCHTEKHAR*VGRPDVTCLHTET-AVADC*TRIKSCTVPTRRXV 440
           QN       T++C    C TE   + +  PD+   + +T A+    T I+S T+  +   
Sbjct: 258 QNCDSMSIVTTECSKTDCETEHETQIIDSPDIDYKNEDTDAIEKETTSIESITIQEK--- 314

Query: 441 SCDSPTHK 464
           SCD+   K
Sbjct: 315 SCDNENDK 322


>U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical
           protein R05G6.4 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 160 SGAVFERRIIXKYIIXNGVDPINGKELXVEDL 255
           S +V +  ++ K I  +G+DPING+ +  +D+
Sbjct: 251 SKSVVKYDVVEKLIKGDGIDPINGEPMSEDDI 282


>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 213 protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 300 TWRFWLYYRWCFDLNKVLNXQLLAVNRIHAIXYYVL 193
           +WR+W+Y +W  + ++     ++   +IH    YVL
Sbjct: 500 SWRYWMYSKWNLETSRHPEMHIMK-GKIHGRTKYVL 534


>Z93393-15|CAE54926.1|  347|Caenorhabditis elegans Hypothetical
           protein Y48E1B.16 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 487 ALATLKPQAGIAAPQAPHPT 546
           A A  +PQ G+ AP+AP PT
Sbjct: 106 APAPTRPQYGVPAPRAPQPT 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,446,083
Number of Sequences: 27780
Number of extensions: 294649
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)