Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H11
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   2.5  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   4.3  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   5.7  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   7.5  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   7.5  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   9.9  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    24   9.9  

>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +2

Query: 47  SLINIVAFIPALS--LEEEQKLKEHGASSCISGKRGRRCCNIWHW-GSVDSISGSRARFQ 217
           SL ++++F   L+  + + Q L+ H  S+ I  +        W W GSVD  SG      
Sbjct: 5   SLFHVLSFCCTLAYAVPKSQFLQLHSLSNAIPVE--------WKWYGSVDEDSGYVYLTS 56

Query: 218 LSGNSGRKHSRCCTSILRK 274
              N  R  S   TS+LR+
Sbjct: 57  KDSNEARSGSLWSTSVLRQ 75


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -3

Query: 252 QRLCFLPLFPLS*NRAREPLMESTDPQCHILQHRRPRLPLMQLEAP 115
           +++ FL L PLS    ++  +  ++P+   +QH++  L  ++L  P
Sbjct: 135 RKMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFP 180


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 350 TSPVLDIAPGSDLFCFIWN*NA 415
           T P+  + P  ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 10  KRILVLKSRTLNFLNQHSSFYTCAIARRRTKIKG 111
           K +L+LK +T    ++ + FY C + R    I+G
Sbjct: 484 KDMLILKDQTDTSESRITGFYFCCLCRENGYIQG 517


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 98  QKLKEHGASSCISGKRGRRCCNIWHWGS 181
           Q   E  A +C  G  G  C  +W+W +
Sbjct: 394 QSSAEAAALACSGGSDGVTCGYMWYWNN 421


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 345 HHLMAWGLPWQQQSTVTQC 289
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +3

Query: 174 GGLLTPLVAPVLXXXXXXXXXXXXXXXXXXYYGNLVAGSIVSQLTAAAMVAPTP*GDAKH 353
           G L+TP V PV+                    G    GSI++Q + A  V P P   +K 
Sbjct: 630 GALVTPSVPPVIATVSKTNTTNTGVQQRGNV-GVTTTGSILTQSSPALPVQPVPLAYSKP 688

Query: 354 HPFSTS 371
            P + S
Sbjct: 689 APTTKS 694


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,760
Number of Sequences: 5004
Number of extensions: 29121
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)