Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H11
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     28   4.3  
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461     28   4.3  
04_03_0690 + 18751601-18753667                                         27   5.6  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    27   7.4  
09_04_0269 + 16265191-16265472,16265574-16266149                       27   7.4  
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342...    27   9.8  

>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
 Frame = +2

Query: 209 RFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 316
           R      +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 17  RLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
          Length = 353

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 65  AFIPALSLEEEQKLKEHG-ASSCISGKRGRRCCNIWHWGSVDSISG 199
           A  P+L    E  + ++G A    +   G R  N W  G  DS+SG
Sbjct: 37  ATFPSLQALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSG 82


>04_03_0690 + 18751601-18753667
          Length = 688

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 50  LINIVAFIPALSLEEEQKLKEHGASSCI 133
           L+ +++++ A +LEE+ KL E GA  CI
Sbjct: 495 LVKLISYLEA-NLEEKSKLYEDGALQCI 521


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 197 GSRARFQLSGNSGRKHSRCCTS 262
           GSRA F+   NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 192 MESTDPQCHILQHRRPRLPL 133
           M  T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176


>05_03_0634 +
           16432679-16433076,16433358-16433610,16433993-16434291,
           16434553-16434729,16435001-16435621,16435690-16435784,
           16436000-16436088,16436185-16436250,16436475-16437026,
           16437879-16437953,16438305-16438375,16438456-16438513,
           16441506-16442048
          Length = 1098

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +2

Query: 62  VAFIPALSLEEEQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISG-SRARFQLSGNSGR 238
           ++ I  +S EE       G +S +  +  RR  N     ++  IS  +R R +  G +  
Sbjct: 90  ISLILGISPEESTSTPCTGRNSSLPFEEIRRMKN-----NLSDISNKARERSRAYGAAVT 144

Query: 239 KHSRCCTSILRKFS 280
           K  RCC +ILRK S
Sbjct: 145 KIERCCPNILRKRS 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,491,543
Number of Sequences: 37544
Number of extensions: 216492
Number of successful extensions: 521
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)