Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H10
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   190   5e-49
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...   184   4e-47
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    30   1.6  
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854...    29   2.7  
04_03_0177 + 12285135-12285500                                         27   8.4  

>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  190 bits (464), Expect = 5e-49
 Identities = 92/137 (67%), Positives = 108/137 (78%), Gaps = 1/137 (0%)
 Frame = +2

Query: 110 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGR 286
           VHFKNT ETA AIRK+PL +A RYL++VI  K+ IPFRR+ GGVGR AQAK +    QGR
Sbjct: 24  VHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGR 83

Query: 287 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSS 466
           WP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A   RRRTYRAHGRINPYMSS
Sbjct: 84  WPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSS 143

Query: 467 PCHIEVCLXEREDAVAR 517
           PCHIE+ L E+E+ V +
Sbjct: 144 PCHIELILSEKEEPVKK 160



 Score = 31.9 bits (69), Expect = 0.39
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +1

Query: 40  MGRYSREPDNPAKSCKARGSNLR 108
           M +YSRE +NP KS KA G +LR
Sbjct: 1   MVKYSREANNPTKSSKAMGRDLR 23


>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score =  184 bits (449), Expect = 4e-47
 Identities = 90/141 (63%), Positives = 107/141 (75%), Gaps = 1/141 (0%)
 Frame = +2

Query: 122 NTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKK 298
           NT ETA A+RK+PL +A RYL++VI  K+ IPFRR+ GGVGR AQ K   +  QGRWP K
Sbjct: 40  NTRETAFALRKLPLVKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAK 99

Query: 299 SAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHI 478
           SA F+L LL+NAESNAD K LDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCH+
Sbjct: 100 SARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHV 159

Query: 479 EVCLXEREDAVARVAPTDDAP 541
           E+ L E+E+AV +   T  AP
Sbjct: 160 ELILSEKEEAVKKEPETTIAP 180



 Score = 36.3 bits (80), Expect = 0.018
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +1

Query: 40  MGRYSREPDNPAKSCKARGSNLR 108
           MG+YS EP NP KS KA G +LR
Sbjct: 1   MGKYSTEPSNPTKSAKAMGRDLR 23


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 221  RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQ 394
            R  +G V RC           R  K   EF  Q+ + +E  S  + + L +  + I H+ 
Sbjct: 1011 RNLSGRVRRCRMHDIIRLLALR--KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLS 1068

Query: 395  VNRAPCLR 418
             + APCLR
Sbjct: 1069 GSSAPCLR 1076


>02_05_1273 +
           35381626-35382486,35382567-35382691,35384851-35385450,
           35385550-35385841,35386199-35386364,35386664-35386707,
           35386866-35386979,35387171-35387290,35387541-35387626,
           35388340-35388502
          Length = 856

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +2

Query: 182 LKNVIEKKECIPFRRFNGGVGRCAQAKQ--FGTTQGRWPKKSAEFLLQLLRNAESNAD-- 349
           L N++E  E     R     GR A+  Q     +  RWP ++AE      RN E NA+  
Sbjct: 400 LDNMVEMHETQVDNRLQDEAGRDARFWQPSLDDSLDRWPNETAE---DAERNWEDNAEEL 456

Query: 350 -NKTLDVDRLVIDHIQ 394
            ++T++ D    DH+Q
Sbjct: 457 HSETMEDDAREHDHLQ 472


>04_03_0177 + 12285135-12285500
          Length = 121

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 59  SRITLRNPAKRVVQTSAVHFKNTYETAMAIRKMPLRRAVR 178
           SRI  R P +  V+  A H+     T   I + P++ AVR
Sbjct: 47  SRIISRTPMEVAVREIATHWFEDQRTCRVISRTPIKVAVR 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,302,625
Number of Sequences: 37544
Number of extensions: 343013
Number of successful extensions: 906
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)