Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H10
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   217   5e-57
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   115   5e-38
AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    28   5.7  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    27   7.5  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  217 bits (530), Expect = 5e-57
 Identities = 103/143 (72%), Positives = 118/143 (82%)
 Frame = +2

Query: 110 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRW 289
           VHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF+GG+GR AQ KQ+ TTQGRW
Sbjct: 26  VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQGRW 85

Query: 290 PKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSP 469
           P KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSP
Sbjct: 86  PVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSP 145

Query: 470 CHIEVCLXEREDAVARVAPTDDA 538
           CHIEV L E+ED V++  PTDDA
Sbjct: 146 CHIEVILAEKEDVVSK--PTDDA 166



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 49  YSREPDNPAKSCKARGSNLR 108
           YSR P+N  KSCKARGS+LR
Sbjct: 6   YSRAPENSTKSCKARGSDLR 25


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  115 bits (276), Expect(2) = 5e-38
 Identities = 56/75 (74%), Positives = 62/75 (82%)
 Frame = +2

Query: 314 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLX 493
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L 
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 494 EREDAVARVAPTDDA 538
           E+ED V++  PTDDA
Sbjct: 126 EKEDVVSK--PTDDA 138



 Score = 60.5 bits (140), Expect(2) = 5e-38
 Identities = 27/40 (67%), Positives = 32/40 (80%)
 Frame = +2

Query: 110 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 229
           VHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 26  VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 49  YSREPDNPAKSCKARGSNLR 108
           YSR P+N  KSCKARGS+LR
Sbjct: 6   YSRAPENSTKSCKARGSDLR 25


>AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical
           protein Y57A10B.1 protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 184 EVTNSTTERHLPDCHCGLICVLKVNSGGLNHALCRISQGYPAPESNDPLL 35
           ++T   T++ LP      +  L   S   N  LCRI      P+SNDPL+
Sbjct: 162 DLTCPKTQKELPSPSASSVYSL-ARSDMSNEPLCRICHCCWPPDSNDPLI 210


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -2

Query: 476 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 348
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 581 FDAQAFSWKAFXSLGHHQ*GLPWRQHLRVR*DILRCGRETTCRG 450
           F + A+  +A  +L  H+  L    HL  + D+LRC R T+C G
Sbjct: 344 FGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = +2

Query: 287 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 448
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 449 NPYMSSPCHIE 481
           NP+  SPC ++
Sbjct: 548 NPH--SPCMVD 556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,442,893
Number of Sequences: 27780
Number of extensions: 283523
Number of successful extensions: 677
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)