Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_H09
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 211 8e-56
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 211 8e-56
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 149 3e-37
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 86 4e-18
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 75 1e-14
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 73 3e-14
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 67 2e-12
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 38 0.001
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.020
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.020
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.020
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 31 0.19
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 30 0.33
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 28 1.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.3
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 3.1
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 26 5.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.4
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.2
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.2
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 25 9.5
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 211 bits (515), Expect = 8e-56
Identities = 107/187 (57%), Positives = 134/187 (71%), Gaps = 1/187 (0%)
Frame = +2
Query: 95 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 274
+E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR DEQ+R
Sbjct: 7 EEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQER 66
Query: 275 CITIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPXHVDFSSEVTAALRV 451
+TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSP HVDFSSEVTAALRV
Sbjct: 67 GVTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRV 121
Query: 452 TDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFXRI 631
TDGAL QTETVLRQA+ ERI+P++ +NK+DR YQ F R+
Sbjct: 122 TDGALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARV 181
Query: 632 VQNVTVI 652
V++V V+
Sbjct: 182 VESVNVV 188
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 211 bits (515), Expect = 8e-56
Identities = 107/187 (57%), Positives = 134/187 (71%), Gaps = 1/187 (0%)
Frame = +2
Query: 95 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 274
+E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR DEQ+R
Sbjct: 7 EEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQER 66
Query: 275 CITIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPXHVDFSSEVTAALRV 451
+TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSP HVDFSSEVTAALRV
Sbjct: 67 GVTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRV 121
Query: 452 TDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFXRI 631
TDGAL QTETVLRQA+ ERI+P++ +NK+DR YQ F R+
Sbjct: 122 TDGALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARV 181
Query: 632 VQNVTVI 652
V++V V+
Sbjct: 182 VESVNVV 188
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 149 bits (361), Expect = 3e-37
Identities = 83/186 (44%), Positives = 115/186 (61%)
Frame = +2
Query: 95 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 274
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66
Query: 275 CITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVT 454
IT+KS+AIS+FF++ I+ D++ + EK +LINLIDSP HVDFSSEV++A R+
Sbjct: 67 GITMKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLC 118
Query: 455 DGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFXRIV 634
DGA QT TVLRQA +RIK IL +NKMDR + R+V
Sbjct: 119 DGAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHLLRLV 178
Query: 635 QNVTVI 652
+ V +
Sbjct: 179 EQVNAV 184
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 86.2 bits (204), Expect = 4e-18
Identities = 59/160 (36%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Frame = +2
Query: 116 DKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA--GETRF---TDTRKDEQDR 274
DKKR IRN+ + AH+D GK+T T+ ++ G I G+ D + E+++
Sbjct: 52 DKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREK 111
Query: 275 CITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVT 454
ITI+S A +E + N Q+ EK + IN+ID+P H+DF+ EV ALRV
Sbjct: 112 GITIQSAATHCTWERTVDQIE--ANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVL 169
Query: 455 DGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 574
DGA+ QT TV RQ + I F+NKMDR
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDR 209
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 74.5 bits (175), Expect = 1e-14
Identities = 54/151 (35%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Frame = +2
Query: 128 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFT--DTRKDEQDRCITIKSTAI 301
+IRN+ +IAH+D GK+TLT+ ++ G + +T T D E+ R ITI S AI
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDTVMDYLPAERQRGITINSAAI 86
Query: 302 SMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDGALXXXXX 481
S + +QR INLID+P H DF+ EV ++ V DGA+
Sbjct: 87 SFTWR------------NQR--------INLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 482 XXXXXXQTETVLRQAIAERIKPILFMNKMDR 574
QT+ V +QA I ++F+NKMDR
Sbjct: 127 SAGVEAQTKVVWKQATKRGIPKVIFVNKMDR 157
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 73.3 bits (172), Expect = 3e-14
Identities = 51/174 (29%), Positives = 81/174 (46%)
Frame = +2
Query: 101 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 280
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I +F D + E+ R I
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLDKLEVERRRGI 106
Query: 281 TIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDG 460
T+K+ SM + + +L+NLID+P HVDF +EV +L +G
Sbjct: 107 TVKAQTCSMIYYYH----------------GQSYLLNLIDTPGHVDFRAEVMHSLAACEG 150
Query: 461 ALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTF 622
+ QT + A ++ + I +NK+D QTF
Sbjct: 151 CILLVDASQGIQAQTLSNFYMAFSQNLVIIPVLNKVDLPTADVDRTLIQVQQTF 204
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 67.3 bits (157), Expect = 2e-12
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 1/180 (0%)
Frame = +2
Query: 107 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCIT 283
G++ ++R+ V H+ HGKS L D LV + R+TDT E++R ++
Sbjct: 132 GLLTGTDDVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMS 191
Query: 284 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDGA 463
IKST +++ D + K+ F ID+P HVDF EV A + ++DG
Sbjct: 192 IKSTPLTLAVS------------DMKGKT---FAFQCIDTPGHVDFVDEVAAPMAISDGV 236
Query: 464 LXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFXRIVQNV 643
+ T +++ AI + +L +NK+DR Y ++ V
Sbjct: 237 VLVVDVIEGVMINTTRIIKHAILHDMPIVLVLNKVDRLILELRLPPNDAYHKLRHVIDEV 296
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 38.3 bits (85), Expect = 0.001
Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 1/152 (0%)
Frame = +2
Query: 119 KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTA 298
KK ++ N+ I HVDHGK+TLT ++ + A + D +E+ R ITI S
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITISSAH 108
Query: 299 ISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDGALXXXX 478
+ +E + +D P H D+ + DGA+
Sbjct: 109 VE--YETANRHYAH------------------VDCPGHADYIKNMITGAATMDGAIIVVS 148
Query: 479 XXXXXXXQTETVLRQAIAERIKPI-LFMNKMD 571
QT L A +K I +++NK+D
Sbjct: 149 ATDGQMPQTREHLLLARQVGVKQIVVYINKVD 180
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 113 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 208
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 113 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 208
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 113 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 208
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 30.7 bits (66), Expect = 0.19
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Frame = +2
Query: 92 LDEIRGMMDKKR-NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQ 268
+DE M D+ R I + K+ +T L S+ ++A A R+ D + +
Sbjct: 435 IDEFDKMRDEDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDMKTPGE 494
Query: 269 DRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTA 439
+ I +ST +S F D++FI + E ++ ++I+ ++ SSE A
Sbjct: 495 N--IDFQSTILSRF------DMIFIVKDEHDETKDRNIARHVINLHTNLQESSETLA 543
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 29.9 bits (64), Expect = 0.33
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2
Query: 140 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR----FTDTRKDEQDRCITIKSTAISM 307
++++ HVDHGK+TL D+ K+ I + G T+ FT D+ + IT T M
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQKIGAFT-VPFDKGSKFITFLDTPGHM 231
Query: 308 FFELEEK 328
FE K
Sbjct: 232 AFEAMRK 238
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 83 ISRLDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSL 193
IS L I + ++ N+ I HV HGKST+ ++
Sbjct: 7 ISELSPIHPAIISRQATINIGTIGHVAHGKSTVVKAI 43
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -2
Query: 516 STVSVCTHTPDTQSTT-TRAPSVTRSAAVTSEEKSTCXGESIKLIKKPFSLFSRWSGFVM 340
+T S + +P + STT T +PS + S++ +S S+ S S S S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 339 NTKSFSSSSKNIEMAV 292
++ S SSSS + + +
Sbjct: 195 SSSSSSSSSSSSSVPI 210
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -2
Query: 519 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCXGESIKLIKKPFSLFSRWSGFVM 340
++TVS + + T S+++ +PS + + TS S+ S S S S
Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 339 NTKSFSSSSKN 307
++ S SSSS +
Sbjct: 184 SSSSSSSSSSS 194
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.6 bits (56), Expect = 3.1
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Frame = +2
Query: 137 NMSVIAHVDHGKSTLTDSLVSKAGII----------AGARAGETRF-----TDTRKDEQD 271
N+ I HVD GKSTL +++ G++ AG+ + D+ +E++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 299
Query: 272 RCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALR 448
+ T++ +FE E + + P KG++ N+I+ D V +A R
Sbjct: 300 KGKTVE--VGRAYFETEHRRFSLLDAP-----GHKGYVTNMINGASQADIGVLVISARR 351
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 378 PFSLFSRWSGFVMNTK-SFSSSSKNIEMAVDLMVMQR 271
P S +S W+ V+NTK SFS ++M +L+ Q+
Sbjct: 168 PKSTYSYWAS-VLNTKASFSKKKSRVQMVKELIDGQK 203
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.4
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = +2
Query: 47 NRTKIINHLKW*ISR-LDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGA 223
N+ K ++++K +S L +R + D +++ I + +L D L S A
Sbjct: 1629 NQVKDLSNIKDSLSEDLRTLRSLEDSVASLQKECKIK--SNTVESLQDVLTSVQARNAEL 1686
Query: 224 RAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFL 385
+R D + DRC + + +LEE+ F +Q+ ++ GFL
Sbjct: 1687 EDEVSRSVDKIRRRDDRCEHLSGKLKKLHSQLEEQHETFF-RAEQQRMTQLGFL 1739
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -2
Query: 516 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCXGESIKLIKKPFSLFSRWSGFVMN 337
S+ S T TP + STT+ + S + S ++S S+ + + S S S +
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSS-SASSSGSISSAD 198
Query: 336 TKSFSSSSKN 307
K+ S+SS +
Sbjct: 199 AKTVSASSNS 208
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 162 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 269
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +2
Query: 404 PXHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKM 568
P S+ + AA + TDG+L Q+ + A+ E+++PI + +
Sbjct: 387 PVPSKLSTALHAARKSTDGSLGSRVKVLREESQSFVPTKSAVTEQVEPIQLIRSL 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,141
Number of Sequences: 5004
Number of extensions: 48844
Number of successful extensions: 170
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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