Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_H09
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 268 2e-72
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 265 2e-71
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 113 1e-25
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 113 1e-25
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 82 3e-16
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 81 7e-16
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 76 2e-14
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 76 2e-14
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 69 3e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 41 7e-04
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 41 7e-04
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 41 7e-04
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 36 0.019
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 36 0.019
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 35 0.044
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 35 0.044
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 33 0.23
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.23
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 33 0.23
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 33 0.23
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 33 0.23
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 32 0.31
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.54
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 31 0.54
AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical... 31 0.94
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 30 1.6
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 30 1.6
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 30 1.6
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 30 1.6
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 30 1.6
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 2.9
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 2.9
Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical pr... 29 3.8
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 29 3.8
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 6.6
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 28 6.6
AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical ... 28 6.6
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical pr... 27 8.7
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 27 8.7
AF039034-1|AAB94161.2| 423|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 268 bits (657), Expect = 2e-72
Identities = 140/195 (71%), Positives = 154/195 (78%), Gaps = 8/195 (4%)
Frame = +2
Query: 92 LDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQD 271
+DEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTRKDEQ+
Sbjct: 6 VDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQE 65
Query: 272 RCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPXHVDFSS 427
RCITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSP HVDFSS
Sbjct: 66 RCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSS 125
Query: 428 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXX 607
EVTAALRVTDGAL QTETVLRQAIAERIKP+LFMNKMDR
Sbjct: 126 EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEE 185
Query: 608 XYQTFXRIVQNVTVI 652
+QTF RIV+N+ VI
Sbjct: 186 LFQTFQRIVENINVI 200
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 265 bits (650), Expect = 2e-71
Identities = 139/195 (71%), Positives = 153/195 (78%), Gaps = 8/195 (4%)
Frame = +2
Query: 92 LDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQD 271
+DEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTRKDEQ+
Sbjct: 6 VDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQE 65
Query: 272 RCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPXHVDFSS 427
RCITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSP HVDFSS
Sbjct: 66 RCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSS 125
Query: 428 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXX 607
EVTAAL VTDGAL QTETVLRQAIAERIKP+LFMNKMDR
Sbjct: 126 EVTAALGVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEE 185
Query: 608 XYQTFXRIVQNVTVI 652
+QTF RIV+N+ VI
Sbjct: 186 LFQTFQRIVENINVI 200
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 113 bits (271), Expect = 1e-25
Identities = 69/172 (40%), Positives = 94/172 (54%)
Frame = +2
Query: 128 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 307
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 308 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDGALXXXXXXX 487
E LINLIDSP HVDFS EVT+AL ++D AL
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIE 118
Query: 488 XXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFXRIVQNV 643
QTE ++RQ I IL +NK+DR YQ R+++ V
Sbjct: 119 GICSQTEALIRQVIRNGQAMILVINKIDRLRVELKMSSSEAYQHMSRLIEGV 170
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 113 bits (271), Expect = 1e-25
Identities = 69/172 (40%), Positives = 94/172 (54%)
Frame = +2
Query: 128 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 307
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 308 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDGALXXXXXXX 487
E LINLIDSP HVDFS EVT+AL ++D AL
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIE 118
Query: 488 XXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFXRIVQNV 643
QTE ++RQ I IL +NK+DR YQ R+++ V
Sbjct: 119 GICSQTEALIRQVIRNGQAMILVINKIDRLRVELKMSSSEAYQHMSRLIEGV 170
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 82.2 bits (194), Expect = 3e-16
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Frame = +2
Query: 83 ISRLDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRK 259
+ + + + +MD +RN+++ H+ HGK+T D L+ + A + RFTD
Sbjct: 116 VYKKEYLADLMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILF 175
Query: 260 DEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTA 439
E+ R +IKS +S I D R KS +L+N+ID+P HV+FS E+TA
Sbjct: 176 IEKQRGCSIKSQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTA 220
Query: 440 ALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 574
+ R+ DG + TE +R AI ER+ L ++K+DR
Sbjct: 221 SYRLADGVVVMVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDR 265
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 81.0 bits (191), Expect = 7e-16
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 1/155 (0%)
Frame = +2
Query: 113 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIK 289
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IK
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 290 STAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDGALX 469
S +S I D R KS +L+N+ID+P HV+FS E+TA+ R+ DG +
Sbjct: 61 SQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVV 105
Query: 470 XXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 574
TE +R AI ER+ L ++K+DR
Sbjct: 106 MVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDR 140
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 76.2 bits (179), Expect = 2e-14
Identities = 50/147 (34%), Positives = 74/147 (50%)
Frame = +2
Query: 131 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 310
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+K+ ++
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKAQTAAL- 97
Query: 311 FELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDGALXXXXXXXX 490
+G+L+NLID+P HVDFS+EV+ +L V DG L
Sbjct: 98 -------------------RHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
Query: 491 XXXQTETVLRQAIAERIKPILFMNKMD 571
QT A + I+ I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNIQIIPVINKID 165
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 76.2 bits (179), Expect = 2e-14
Identities = 55/150 (36%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Frame = +2
Query: 131 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITIKSTAIS 304
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT++S A++
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVN 84
Query: 305 MFFELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDGALXXXXXX 484
+ + KG INLID+P HVDF EV +RV DG +
Sbjct: 85 LDW--------------------KGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGS 124
Query: 485 XXXXXQTETVLRQAIAERIKPILFMNKMDR 574
QT TV RQ+ ++ F+NKMD+
Sbjct: 125 AGVQPQTLTVWRQSSKFKLPAHFFINKMDK 154
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 68.9 bits (161), Expect = 3e-12
Identities = 53/148 (35%), Positives = 71/148 (47%)
Frame = +2
Query: 131 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 310
IRN+ + AH+D GK+T+T+ ++ AG I E R D D F
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRIDSMH--EVRGKDDVGATMD------------F 89
Query: 311 FELEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDGALXXXXXXXX 490
+LE + + I + G IN+ID+P HVDF+ EV ALRV DGA+
Sbjct: 90 MDLERQRGITIQSA-ATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGG 148
Query: 491 XXXQTETVLRQAIAERIKPILFMNKMDR 574
QT TV RQ + I F+NKMDR
Sbjct: 149 VQSQTFTVNRQLARYNVPFICFVNKMDR 176
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 41.1 bits (92), Expect = 7e-04
Identities = 38/145 (26%), Positives = 61/145 (42%)
Frame = +2
Query: 137 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 316
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 108
Query: 317 LEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDGALXXXXXXXXXX 496
++ I P + ++ N+I ++ + V AA TDG +
Sbjct: 109 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDGPMPQTREHLLLA 160
Query: 497 XQTETVLRQAIAERIKPILFMNKMD 571
Q L ++FMNK+D
Sbjct: 161 RQVGVPLDNI-------VVFMNKVD 178
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 41.1 bits (92), Expect = 7e-04
Identities = 38/145 (26%), Positives = 61/145 (42%)
Frame = +2
Query: 137 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 316
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 109
Query: 317 LEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDGALXXXXXXXXXX 496
++ I P + ++ N+I ++ + V AA TDG +
Sbjct: 110 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDGPMPQTREHLLLA 161
Query: 497 XQTETVLRQAIAERIKPILFMNKMD 571
Q L ++FMNK+D
Sbjct: 162 RQVGVPLDNI-------VVFMNKVD 179
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 41.1 bits (92), Expect = 7e-04
Identities = 38/145 (26%), Positives = 61/145 (42%)
Frame = +2
Query: 137 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 316
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 109
Query: 317 LEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDGALXXXXXXXXXX 496
++ I P + ++ N+I ++ + V AA TDG +
Sbjct: 110 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDGPMPQTREHLLLA 161
Query: 497 XQTETVLRQAIAERIKPILFMNKMD 571
Q L ++FMNK+D
Sbjct: 162 RQVGVPLDNI-------VVFMNKVD 179
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 36.3 bits (80), Expect = 0.019
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Frame = +2
Query: 125 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 304
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 221
Query: 305 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPXHVDFSSEVTAALRVTDGAL 466
+ E EE+ +T R E I L+D+P H DF S + D A+
Sbjct: 222 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAI 276
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 36.3 bits (80), Expect = 0.019
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Frame = +2
Query: 125 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 304
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 239
Query: 305 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPXHVDFSSEVTAALRVTDGAL 466
+ E EE+ +T R E I L+D+P H DF S + D A+
Sbjct: 240 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAI 294
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 35.1 bits (77), Expect = 0.044
Identities = 33/110 (30%), Positives = 50/110 (45%)
Frame = +2
Query: 137 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 316
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGY--- 103
Query: 317 LEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDGAL 466
E L ++ D S+ F+ N+I +D + V AA TDG +
Sbjct: 104 --ESPLRRYSHTDCPGHSD--FIKNMICGTSQMDVAVLVIAA---TDGVM 146
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 35.1 bits (77), Expect = 0.044
Identities = 33/110 (30%), Positives = 50/110 (45%)
Frame = +2
Query: 137 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 316
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGY--- 103
Query: 317 LEEKDLVFITNPDQREKSEKGFLINLIDSPXHVDFSSEVTAALRVTDGAL 466
E L ++ D S+ F+ N+I +D + V AA TDG +
Sbjct: 104 --ESPLRRYSHTDCPGHSD--FIKNMICGTSQMDVAVLVIAA---TDGVM 146
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 113 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 208
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 113 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 208
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 113 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 208
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 113 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 208
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 113 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 208
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = -2
Query: 534 SAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCXGESIKLIKKPFSLFSRW 355
+AI ++ + T +T STT+ P +T + + +E T S+ P L RW
Sbjct: 691 TAIFAEASTGIITTDEETTSTTSTTPEITSTKEIVTESAITQTSVSVVESSTPRQLPERW 750
Query: 354 SGFVMNTK 331
V K
Sbjct: 751 KAIVNKFK 758
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 116 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 241
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 31.5 bits (68), Expect = 0.54
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 2/173 (1%)
Frame = +2
Query: 62 INHLKW*ISRLDEIRGMMDKKRNIRN--MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGE 235
+ +K I++ E+ N+R+ + V+ HVD GK+ + D+ + + + G G
Sbjct: 459 MERIKLRIAKRKEVAQANRSTDNLRSPVICVLGHVDTGKTKMLDT-IRRTNVQQGEAGGI 517
Query: 236 TRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPXHV 415
T +Q + + AI E + F+ Q + GFLI ID+P H
Sbjct: 518 T--------QQIGATEVPAEAIK---ERCRQVRGFL----QDQMKIPGFLI--IDTPGHE 560
Query: 416 DFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 574
FS+ T + D A+ QT L+ I + ++ +NK+DR
Sbjct: 561 SFSNLRTRGSSLCDFAILVVDIMHGLEPQTIESLKLLIKGKTPFVIALNKIDR 613
>AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical
protein Y105C5A.23 protein.
Length = 415
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +3
Query: 168 ASQPSRTRWFPRPVSLLVREPERPVSLTRVRTNKTVASPLNLRPSLCSSSLKRKI*YSSQ 347
AS+ + + F R V+ ++EPE+P++ R+ + PL RPS+ S +
Sbjct: 271 ASEWNPLKTFSRHVN--IKEPEKPMTTPRIVVSDETEVPLTQRPSISPSEASAVMRTGVH 328
Query: 348 TLTS 359
T TS
Sbjct: 329 TSTS 332
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -2
Query: 345 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 169
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 168 P 166
P
Sbjct: 102 P 102
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -2
Query: 399 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLMVMQ 274
S+ L+ PF L +R +G+ + FSS S + MAV ++ +Q
Sbjct: 68 SVTLLGIPFILATRLAGYSLGLLKFSSYSFLVTMAVSVLSLQ 109
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 493 HTRHTVNNHKGSISDTECSCYFRREINV 410
H T H G IS T C+ +FRR I +
Sbjct: 15 HNTETTRRHFGIISCTACAAFFRRSIGM 42
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -2
Query: 345 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 169
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 168 P 166
P
Sbjct: 102 P 102
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 486 DTQSTTTRAPSVTRSAAVTSEEKSTCXGESIK 391
D+ +T R+P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 164 DRRGRSQTCCGYSASCPSSHG 102
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 164 DRRGRSQTCCGYSASCPSSHG 102
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical
protein F40E10.5 protein.
Length = 284
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -2
Query: 498 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCXGESI---KLIKKPFSLF 364
T T T +TTT AP++ + + T+E+ +T +I + +K FS F
Sbjct: 218 TTTTTTTTTTTEAPTMPEAVSSTTEQSTTTTAAAIIAEETKEKEFSAF 265
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
R08E3.1b protein.
Length = 1465
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 516 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 427
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
R08E3.1a protein.
Length = 1512
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 516 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 427
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical
protein ZK265.7 protein.
Length = 370
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 519 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 412
++T + T T T +TTT P+ + A + +KST
Sbjct: 163 KTTTTTTTSTTSTSTTTTEKPTTATTTARVTPKKST 198
>Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical
protein F23H12.5 protein.
Length = 802
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 516 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSE 424
ST + T T T +TTT AP+ T + T+E
Sbjct: 210 STSTTTTTTTSTTTTTTEAPTTTTTIKTTTE 240
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -2
Query: 489 PDTQSTTT-RAPSVTRSAAVTSEEKSTCXGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 316
P Q T+T P V AA ++ + E PFS SR V NT S SSS
Sbjct: 33 PQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMSAVFNTPSLSSS 91
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 516 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 412
+T + + T + +TTT AP+ T S VT+ E +T
Sbjct: 235 TTTTTESPTTEASTTTTEAPTTTTSEEVTTTEITT 269
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -2
Query: 489 PDTQSTTT-RAPSVTRSAAVTSEEKSTCXGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 316
P Q T+T P V AA ++ + E PFS SR V NT S SSS
Sbjct: 33 PQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMSAVFNTPSLSSS 91
>AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical
protein T05A8.6 protein.
Length = 210
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 516 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCXGESIKLIKKP 376
+T T T T TTT+AP T + A T+ + C S ++ P
Sbjct: 74 TTPGATTVTTTTAPTTTKAPDCTTTTAPTTTKAPDCTTCSQDILTDP 120
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 137 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 271
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 137 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 271
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 516 STVSVCTHTPDTQSTTTRAPSVTRS-AAVTSEEKSTCXGESIKLIKKP 376
+T + T T T +TTT P+ T + A TSE +T + + KP
Sbjct: 222 TTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKP 269
>Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical
protein T21C9.3b protein.
Length = 565
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 508 FGLYTHTRHTVNNHKGSISDTECS 437
F L +T+ TV+ KG+ SDTEC+
Sbjct: 371 FPLCDYTQCTVDVQKGNYSDTECA 394
>Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical
protein T21C9.3a protein.
Length = 501
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 508 FGLYTHTRHTVNNHKGSISDTECS 437
F L +T+ TV+ KG+ SDTEC+
Sbjct: 371 FPLCDYTQCTVDVQKGNYSDTECA 394
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -2
Query: 492 TPDTQSTTTRAPSVTRSAAVTSEE-KSTCXGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 316
TPD ++TTT P+ T++ + +E+ G ++ P S+ S SG N+ + ++S
Sbjct: 157 TPDPKATTTPTPTTTKAQNIIAEDPNGGQLGGGELVVTNPGSVGS-GSGNSGNSSNNNNS 215
Query: 315 SKN 307
S N
Sbjct: 216 SGN 218
>AF039034-1|AAB94161.2| 423|Caenorhabditis elegans Hypothetical
protein H22D07.1 protein.
Length = 423
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = -2
Query: 486 DTQSTTTRAPSVTRSAAVTSEEKSTCXGESIKLIKKPFSLFSRWSGFVMNTKSFSSSSKN 307
+TQSTTTR+P TRS + +E+S S + + G + + S SK
Sbjct: 286 ETQSTTTRSP--TRSTYLLQQEESFALRSSSSYDFESHNSHPTRQGSIRSRASTGGGSKF 343
Query: 306 IEMAV 292
MAV
Sbjct: 344 GAMAV 348
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,249,144
Number of Sequences: 27780
Number of extensions: 289138
Number of successful extensions: 1161
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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