Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H06
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   201   4e-54
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   201   4e-54
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  201 bits (490), Expect = 4e-54
 Identities = 102/136 (75%), Positives = 113/136 (83%), Gaps = 2/136 (1%)
 Frame = +3

Query: 147 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 326
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 327 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFXDKYKQVFLXRV--LTRRRSSGVTSLV 500
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAF DKYKQVFL  V   T+     V +L 
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 501 IWPPGGAAGATSLCFV 548
               GGAAGATSLCFV
Sbjct: 121 ---SGGAAGATSLCFV 133



 Score = 29.1 bits (62), Expect = 0.031
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +3

Query: 174 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 353
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 354 LSFWRGNFANVIRYFPTQALNFAFXD 431
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.095
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 234 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 392
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  201 bits (490), Expect = 4e-54
 Identities = 102/136 (75%), Positives = 113/136 (83%), Gaps = 2/136 (1%)
 Frame = +3

Query: 147 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 326
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 327 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFXDKYKQVFLXRV--LTRRRSSGVTSLV 500
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAF DKYKQVFL  V   T+     V +L 
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 501 IWPPGGAAGATSLCFV 548
               GGAAGATSLCFV
Sbjct: 121 ---SGGAAGATSLCFV 133



 Score = 29.1 bits (62), Expect = 0.031
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +3

Query: 174 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 353
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 354 LSFWRGNFANVIRYFPTQALNFAFXD 431
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.095
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 234 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 392
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 200 TASQEVLSERDRIGEVRHFVRLCDLQLGEYVEVG 99
           TA  + L ++ +I ++  +VR  DL   E+ +VG
Sbjct: 27  TADMDFLHKQKKIFDLLLYVRQADLSDAEWYDVG 60


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 200 TASQEVLSERDRIGEVRHFVRLCDLQLGEYVEVG 99
           TA  + L ++ +I ++  +VR  DL   E+ +VG
Sbjct: 27  TADMDFLHKQKKIFDLLLYVRQADLSDAEWYDVG 60


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 538 REVAPAAPPGGQITSEVTPELR 473
           ++++PA P G + +   TPE++
Sbjct: 272 KKLSPATPKGSKCSMITTPEIK 293


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 380 QRHQVLPDPGAQLRLQXQVQAGVPRAXVDKKTQFWRYFAGNL 505
           +R Q   DP   + LQ Q Q+  P   V       RY   +L
Sbjct: 773 KRVQTPFDPDVPIELQIQKQSHTPNGIVKTWIAHDRYLPNSL 814


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 541 HREVAPAAPPGGQITSEVTP 482
           H ++  + P GG + + VTP
Sbjct: 143 HEKLVESFPRGGSLPTPVTP 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,960
Number of Sequences: 438
Number of extensions: 2469
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)