Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H04
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    55   3e-09
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   5.0  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    24   8.8  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    24   8.8  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 87

 Score = 55.2 bits (127), Expect = 3e-09
 Identities = 23/31 (74%), Positives = 27/31 (87%)
 Frame = +3

Query: 3  MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
          M+N AG+ VDLY PRKCSA+NR+I AKDHAS
Sbjct: 1  MENEAGQLVDLYVPRKCSATNRIIQAKDHAS 31



 Score = 42.3 bits (95), Expect = 2e-05
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +1

Query: 97  LQLVIADVDPATGRAADTSKM-YVVCGAIRRMGESDDCIVRLTKKDGIL 240
           +Q+ +  VD A GR     K  Y + G +R  GESDDCI RLT +DG+L
Sbjct: 32  VQINVCAVD-AEGRQIPGEKTTYAISGFVRSKGESDDCINRLTTQDGLL 79


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -1

Query: 180 DSPT--DNIHFRCVSSTTCGGVYVSN 109
           D PT  D I   C     CGG+Y +N
Sbjct: 214 DEPTRHDIIRHACPGGGACGGMYTAN 239


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 248 FLASIPSFFVNLTMQSSDSPILRIAPQTTYILDVSAARP 132
           F  S+P   V L     D+P + + P ++YI   SA  P
Sbjct: 288 FPLSLPGQSVELAW---DAPGMAVGPNSSYITSTSAGTP 323


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 85  SLAWMRRLLAEHFLGQYKSTNSPAXFCI 2
           SL  M  +L EH+ G++    SP   CI
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCI 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,145,159
Number of Sequences: 5004
Number of extensions: 18704
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)