Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H04
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     54   5e-08
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    52   1e-07
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949     27   3.6  

>03_02_0976 +
          12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 53.6 bits (123), Expect = 5e-08
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = +3

Query: 3  MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
          MQN  G+ VDLY PRKCSA+NR+I AKDHAS
Sbjct: 1  MQNEEGQMVDLYVPRKCSATNRIITAKDHAS 31


>03_05_0610 -
          26108546-26108671,26108739-26108789,26109410-26109542,
          26109633-26109682
          Length = 119

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 22/31 (70%), Positives = 25/31 (80%)
 Frame = +3

Query: 3  MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
          MQN  G+ VDLY PRKCS +NR+I AKDHAS
Sbjct: 1  MQNEEGQMVDLYVPRKCSTTNRIITAKDHAS 31


>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
          Length = 550

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -2

Query: 170 QTTYILDVSAARPVAGSTSAIT-SCS-*SMVLSVDEAVAGR 54
           Q T IL+ +  +P+  STSAIT +C    M+L +D+ V  R
Sbjct: 510 QITNILEENVVQPLLVSTSAITLACECVRMILKIDDIVTVR 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,730,488
Number of Sequences: 37544
Number of extensions: 133534
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)