Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_H04
(372 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L04483-1|AAA99893.1| 83|Homo sapiens ribosomal protein S21 pro... 69 6e-12
CR542132-1|CAG46929.1| 83|Homo sapiens RPS21 protein. 69 6e-12
BC021990-1|AAH21990.1| 83|Homo sapiens ribosomal protein S21 p... 69 6e-12
AL121832-3|CAC21458.1| 83|Homo sapiens ribosomal protein S21 p... 69 6e-12
AJ250907-1|CAB83213.1| 83|Homo sapiens ribosomal protein S21 p... 69 6e-12
AB061843-1|BAB79481.1| 83|Homo sapiens ribosomal protein S21 p... 69 6e-12
BC018140-1|AAH18140.1| 81|Homo sapiens RPS21 protein protein. 65 8e-11
X79563-1|CAA56100.2| 97|Homo sapiens 8.2 kDa differentiation f... 60 2e-09
BC027976-1|AAH27976.1| 66|Homo sapiens RPS21 protein protein. 60 2e-09
AL121832-2|CAC29248.1| 90|Homo sapiens ribosomal protein S21 p... 60 2e-09
AL121832-1|CAC29247.1| 66|Homo sapiens ribosomal protein S21 p... 60 2e-09
AB007157-1|BAA25821.1| 54|Homo sapiens ribosomal protein S21 p... 56 4e-08
>L04483-1|AAA99893.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 68.5 bits (160), Expect = 6e-12
Identities = 30/52 (57%), Positives = 39/52 (75%)
Frame = +1
Query: 97 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKNY 252
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K DGI++KN+
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 60.5 bits (140), Expect = 2e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +3
Query: 3 MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
MQN AGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>CR542132-1|CAG46929.1| 83|Homo sapiens RPS21 protein.
Length = 83
Score = 68.5 bits (160), Expect = 6e-12
Identities = 30/52 (57%), Positives = 39/52 (75%)
Frame = +1
Query: 97 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKNY 252
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K DGI++KN+
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 60.5 bits (140), Expect = 2e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +3
Query: 3 MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
MQN AGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>BC021990-1|AAH21990.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 68.5 bits (160), Expect = 6e-12
Identities = 30/52 (57%), Positives = 39/52 (75%)
Frame = +1
Query: 97 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKNY 252
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K DGI++KN+
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 60.5 bits (140), Expect = 2e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +3
Query: 3 MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
MQN AGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AL121832-3|CAC21458.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 68.5 bits (160), Expect = 6e-12
Identities = 30/52 (57%), Positives = 39/52 (75%)
Frame = +1
Query: 97 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKNY 252
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K DGI++KN+
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 60.5 bits (140), Expect = 2e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +3
Query: 3 MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
MQN AGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AJ250907-1|CAB83213.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 68.5 bits (160), Expect = 6e-12
Identities = 30/52 (57%), Positives = 39/52 (75%)
Frame = +1
Query: 97 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKNY 252
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K DGI++KN+
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 60.5 bits (140), Expect = 2e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +3
Query: 3 MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
MQN AGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AB061843-1|BAB79481.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 68.5 bits (160), Expect = 6e-12
Identities = 30/52 (57%), Positives = 39/52 (75%)
Frame = +1
Query: 97 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKNY 252
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K DGI++KN+
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 60.5 bits (140), Expect = 2e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +3
Query: 3 MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
MQN AGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>BC018140-1|AAH18140.1| 81|Homo sapiens RPS21 protein protein.
Length = 81
Score = 64.9 bits (151), Expect = 8e-11
Identities = 29/50 (58%), Positives = 37/50 (74%)
Frame = +1
Query: 97 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGILAK 246
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K DGI++K
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSK 81
Score = 60.5 bits (140), Expect = 2e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +3
Query: 3 MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
MQN AGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>X79563-1|CAA56100.2| 97|Homo sapiens 8.2 kDa differentiation
factor protein.
Length = 97
Score = 60.5 bits (140), Expect = 2e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +3
Query: 3 MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
MQN AGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>BC027976-1|AAH27976.1| 66|Homo sapiens RPS21 protein protein.
Length = 66
Score = 60.5 bits (140), Expect = 2e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +3
Query: 3 MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
MQN AGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AL121832-2|CAC29248.1| 90|Homo sapiens ribosomal protein S21
protein.
Length = 90
Score = 60.5 bits (140), Expect = 2e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +3
Query: 3 MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
MQN AGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
Score = 37.9 bits (84), Expect = 0.010
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 97 LQLVIADVDPATGRAADTSKMYVVCGAIRRM 189
+Q+ +A+VD TGR K Y +CGAIRRM
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRM 62
>AL121832-1|CAC29247.1| 66|Homo sapiens ribosomal protein S21
protein.
Length = 66
Score = 60.5 bits (140), Expect = 2e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +3
Query: 3 MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
MQN AGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AB007157-1|BAA25821.1| 54|Homo sapiens ribosomal protein S21
protein.
Length = 54
Score = 56.0 bits (129), Expect = 4e-08
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +1
Query: 97 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTK 225
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL K
Sbjct: 12 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAK 54
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,515,334
Number of Sequences: 237096
Number of extensions: 695709
Number of successful extensions: 1324
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2421480012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -