Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_H04
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...    61   2e-10
AC024839-8|AAF60825.1|  383|Caenorhabditis elegans Hypothetical ...    27   4.3  
AC024839-7|AAF60827.1|  383|Caenorhabditis elegans Hypothetical ...    27   4.3  
Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    26   7.5  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
 Frame = +1

Query: 97  LQLVIADVDPATGRAAD-TSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKN 249
           +Q+   DVDP TGR     S  Y +CGAIRRMGESDD I+RL +KDG++ ++
Sbjct: 32  VQIDFVDVDPETGRMIPGKSTRYAICGAIRRMGESDDAILRLAQKDGLVPRD 83



 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +3

Query: 3  MQNXAGEFVDLYCPRKCSASNRLIHAKDHAS 95
          MQN AG+ V+LY PRKCS+SNR+I  KDHAS
Sbjct: 1  MQNDAGQTVELYVPRKCSSSNRIIGPKDHAS 31


>AC024839-8|AAF60825.1|  383|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.8 protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +1

Query: 28  LTCTARGNARPATASSTLRTMLQLQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDD- 204
           L    R  A+  +    L  + +L+L++ D       A + S   ++   +    +++D 
Sbjct: 105 LPTNLRDFAQKCSDPHELSLLAKLELIVFD----ESTALNPSSAVLLSKTVATWAQNNDG 160

Query: 205 CIVRLTKKDGILAKNY*HLVHQTT 276
           CIV   KK G+L + Y  L+ + T
Sbjct: 161 CIVGSRKKYGLLGQRYSELIDRVT 184


>AC024839-7|AAF60827.1|  383|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.2 protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +1

Query: 28  LTCTARGNARPATASSTLRTMLQLQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDD- 204
           L    R  A+  +    L  + +L+L++ D       A + S   ++   +    +++D 
Sbjct: 105 LPTNLRDFAQKCSDPHELSLLAKLELIVFD----ESTALNPSSAVLLSKTVATWAQNNDG 160

Query: 205 CIVRLTKKDGILAKNY*HLVHQTT 276
           CIV   KK G+L + Y  L+ + T
Sbjct: 161 CIVGSRKKYGLLGQRYSELIDRVT 184


>Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical
           protein T25E12.4b protein.
          Length = 220

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 118 VDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDG 234
           V  + G  + +S   +   A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 88  WSLAWMRRLLAEHFLGQYKS 29
           W++AW+RR++ E   G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 201  IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 106
            +RL+  +DS T    FR      CG +Y  NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 201  IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 106
            +RL+  +DS T    FR      CG +Y  NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,449,314
Number of Sequences: 27780
Number of extensions: 108253
Number of successful extensions: 297
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)