Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_H01
(395 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 26 1.8
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 2.4
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S... 25 3.2
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 4.3
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 5.6
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 5.6
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 25 5.6
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy... 24 7.4
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 24 7.4
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 24 9.8
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 26.2 bits (55), Expect = 1.8
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 345 VIYCTIVHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLCSKFL 169
+++ T +KL D H L IP S F+E + V CD D + LC ++L
Sbjct: 207 ILWDTSDNKLGTDGTHVQELPIPESHMERFIEARNALVMSLCDVD------ETLCDEYL 259
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 2.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 154 EAPWLRCLSSLCKLNQLASKRSFC 83
+AP L LS++C + + KR FC
Sbjct: 967 DAPALSLLSAVCAYDYASDKRKFC 990
>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
Trp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 3.2
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 213 QSHTLGQRTTCTPPESCSKVKKE*LTNM-HENHQLLIYV 326
QSH L + TP + ++ E L+NM H NH +L YV
Sbjct: 270 QSHPLSSVASGTPSANAILLE-ELLSNMLHANHPILDYV 307
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 201 RISRQSHTLGQRTTCTPPESCSKVKK 278
++ ++S +T TPP+ CS +KK
Sbjct: 36 QMKKESLAASVKTPSTPPKECSHLKK 61
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 194 NVTNLTSESHLGPTDDLHTSRKLFQS 271
+V+ L+S SHL PT +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +1
Query: 145 KVLRRSLKQEFRAEALKRDESHVRVTPWANGRPAHL 252
K + S + FR RD+ + P +N P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 24.6 bits (51), Expect = 5.6
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 291 WLTIPSSLWNSFLEVCR 241
WL+IP+S W++F + +
Sbjct: 507 WLSIPASRWSTFYDASK 523
>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 24.2 bits (50), Expect = 7.4
Identities = 11/59 (18%), Positives = 25/59 (42%)
Frame = +1
Query: 34 RKISTLFLRIKVNKNINKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESH 210
+ ++T + VNK N + AW+ ++ S + + + A++ + E H
Sbjct: 236 KNLTTFCTNVGVNKEANALGAWQIYAKNLVDRSPLDTRPILSDDNSSLIADSTQNCEKH 294
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 24.2 bits (50), Expect = 7.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 58 RIKVNKNINKMSAWRQAGLT 117
+I + K I+ + WRQ GLT
Sbjct: 277 QITLKKQISDLQEWRQMGLT 296
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 194 NVTNLTSESHLGPTDDLHTSRKLFQSEEGI 283
++TNLT D L T LF++E+G+
Sbjct: 573 SLTNLTFNDRCALVDLLITKLALFEAEKGV 602
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,485
Number of Sequences: 5004
Number of extensions: 24437
Number of successful extensions: 71
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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