Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G24
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   208   7e-55
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   207   9e-55
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   2.3  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   7.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.4  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  208 bits (507), Expect = 7e-55
 Identities = 96/156 (61%), Positives = 111/156 (71%)
 Frame = +3

Query: 180 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 359
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 360 RSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIE 539
           RSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH IE
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIE 145

Query: 540 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDIL 647
           +IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVI 181


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  207 bits (506), Expect = 9e-55
 Identities = 96/156 (61%), Positives = 111/156 (71%)
 Frame = +3

Query: 180 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 359
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 360 RSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIE 539
           RSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH IE
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIE 145

Query: 540 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDIL 647
           +IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVV 181


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 215  DQVRTYGRLEHEXGGAWLXPCTVSLFSEYTDSK 117
            D  +TY  +E E  G +    T   FSEY D K
Sbjct: 905  DLAKTYFFIEDEGDGTYKFKLTYGAFSEYLDVK 937


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 155 CTVSLFSEYTDSKGRATDRLISLL 84
           C V ++SEYT + G ++  L++L+
Sbjct: 492 CVVKIWSEYTKNTGESSPVLVALV 515


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 430 GAGTVASTSDSGERPWQQPLLL-PASQR 510
           G+ T+ STS S  RP+ +P L+ P+++R
Sbjct: 507 GSPTILSTSFSLARPYPEPALVSPSTER 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,013
Number of Sequences: 5004
Number of extensions: 47108
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)