Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G20
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    26   3.3  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    26   4.3  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   4.3  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   5.7  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   5.7  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   7.5  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   10.0 
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    25   10.0 

>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = +1

Query: 340 DITDPVTGKKVSKEQYKXXIERQT-ELYGRLKSTFNYSKAPPR----GWQDGKKDFTSKP 504
           D T   T  K S+E     ++  + EL  R+K+  + S  P +    G  D K + T+KP
Sbjct: 94  DSTGVKTSGKRSRESSTVTVDGDSHELPSRIKTQKSESPIPQQVKRDGTTDAKNEETTKP 153

Query: 505 TYTKFHVFDENDP 543
              +   F+E  P
Sbjct: 154 ENNEKDDFEEEPP 166


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 349 DPVTGKKVSKEQYKXXIERQTELYGRLKSTFNYSKAPPRGWQDGKKDF--TSKPT 507
           D V  K++SK+  K   +  + +  +    +N+ K     W+ G K    TS+P+
Sbjct: 114 DSVGEKRISKDSVKHLDKTYSSIDSKKDFKYNFPKTQAPEWRRGAKPLSKTSEPS 168


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 343 ITDPVTGKKVSK-EQYKXXIERQTELYGRLKSTFNYSKAP 459
           + DPVTG++VSK E  K   +R  EL    K     + AP
Sbjct: 17  VLDPVTGEQVSKTELKKREKQRARELAKAKKQAEKAASAP 56


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 311 SWVINFVSFSGNAWIRTMSPV--LHIFXESWQ**NSSFLKYIKRFSXNSNL 165
           SW+I F+   G+ ++   SPV  +H F E  Q      L  I  F  NS +
Sbjct: 251 SWLIGFIEAEGSFYLLQKSPVRIIHGF-EITQNYEQPLLAQISEFLFNSQI 300


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 315 KRSRLSVWRYNRPCYRQ 365
           KR++L  W   +PCY Q
Sbjct: 90  KRNKLIAWMRKKPCYEQ 106


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 62  PRNVNEM--SLMQPGSFSYLDNVYRLLNKMLQKL 157
           P NV  +  SL+ PG+ SYL + Y +L   L  L
Sbjct: 31  PFNVKTLVHSLIPPGALSYLLSTYDILRPWLMAL 64


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +1

Query: 376 KEQYKXXIERQTELYGRLKSTFNYSKAPPRGWQDGKKDFTSKPTYTKFH 522
           +EQY+  IE+  +LY R     + ++A  +  +  +K    K    ++H
Sbjct: 135 EEQYRKGIEKMAKLYEREHDRRSIAEAEKKYVESAQKITLLKQALKRYH 183


>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +1

Query: 256 DIVLIQALPEKLTKLITHEIKEVVYPFGDITDPVTGKKVSKEQYK 390
           D +++   P+KL + +     + V+P  ++ +   G+K   E+ K
Sbjct: 196 DQMVLMQFPDKLPRFMGDADVDPVWPSSEVKEEEAGEKTDVEEKK 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,543
Number of Sequences: 5004
Number of extensions: 40844
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)