Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G20
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-8|AAB53829.1|  160|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AF040655-11|AAB95040.1|  251|Caenorhabditis elegans Hypothetical...    30   0.98 
Z66567-6|CAA91490.2|  281|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z78012-8|CAB01418.2|  945|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z75953-6|CAB00103.2|  945|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AY275181-1|AAP32289.1|  945|Caenorhabditis elegans soluble guany...    28   4.0  
L07143-1|AAB37089.2|  532|Caenorhabditis elegans P granule abnor...    27   9.1  
AB120730-1|BAC87887.1|  532|Caenorhabditis elegans PGL-2 protein.      27   9.1  

>U00048-8|AAB53829.1|  160|Caenorhabditis elegans Hypothetical
           protein C05D11.10 protein.
          Length = 160

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
 Frame = +1

Query: 148 AKIXVKRLELXENLLMYFRKEEFYYCHDSXKICKTGDIVLIQALP--EKLTKLITHEIKE 321
           A++  +  E    L  YF +   ++  D   +   GD VLI+ +    +    ++H +  
Sbjct: 34  AQVRCQMNEFNIYLKKYFARSFDFWALDKTSLGNIGDTVLIKQIDGSSRPKANVSHAVDR 93

Query: 322 VVYPFGDITDPVTGKKVSKEQYKXXIE 402
           VV+ FG+I DPVTG+K+  + +   I+
Sbjct: 94  VVFKFGNIVDPVTGRKIFNDTFADEID 120


>AF040655-11|AAB95040.1|  251|Caenorhabditis elegans Hypothetical
           protein T24E12.2 protein.
          Length = 251

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +1

Query: 349 DPVTGKKVSKEQYKXXIERQTELYGRLKSTFNYSKAPPRGWQDGKKDF 492
           DP  GKKV   Q K  +  Q+ LYG  +ST +Y+   P+   + K+D+
Sbjct: 155 DP-NGKKVVP-QIKMFVRNQSSLYGNQRSTKSYNLPWPKIRSEDKEDW 200


>Z66567-6|CAA91490.2|  281|Caenorhabditis elegans Hypothetical
           protein ZK455.5 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +2

Query: 35  QQNESLKKQPRNVNEMSLMQPG---SFSYLDNVYRL 133
           + + +LKK   NVN+++++ PG   SF+Y D  Y+L
Sbjct: 101 ESSSALKKTWPNVNQVNIVVPGLKDSFNYGDGYYQL 136


>Z78012-8|CAB01418.2|  945|Caenorhabditis elegans Hypothetical
           protein F57F5.2 protein.
          Length = 945

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 17  FQNTGIQQNESLKKQPRNVNEMSLMQPGSFSYLDNVYRLLNKMLQKL 157
           F N G+ Q+  LK++ +N+NE   +   SF  +   +   NK L+ L
Sbjct: 182 FDNVGLGQDLKLKERVKNLNEYLPVDTKSFLQMFPFHIAFNKKLEIL 228


>Z75953-6|CAB00103.2|  945|Caenorhabditis elegans Hypothetical
           protein F57F5.2 protein.
          Length = 945

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 17  FQNTGIQQNESLKKQPRNVNEMSLMQPGSFSYLDNVYRLLNKMLQKL 157
           F N G+ Q+  LK++ +N+NE   +   SF  +   +   NK L+ L
Sbjct: 182 FDNVGLGQDLKLKERVKNLNEYLPVDTKSFLQMFPFHIAFNKKLEIL 228


>AY275181-1|AAP32289.1|  945|Caenorhabditis elegans soluble guanylyl
           cyclase GCY-33 protein.
          Length = 945

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 17  FQNTGIQQNESLKKQPRNVNEMSLMQPGSFSYLDNVYRLLNKMLQKL 157
           F N G+ Q+  LK++ +N+NE   +   SF  +   +   NK L+ L
Sbjct: 182 FDNVGLGQDLKLKERVKNLNEYLPVDTKSFLQMFPFHIAFNKKLEIL 228


>L07143-1|AAB37089.2|  532|Caenorhabditis elegans P granule
           abnormality protein 2 protein.
          Length = 532

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 436 TFNYSKAPPRGWQDG--KKDFTSKPTYTKFHV 525
           T N+ K P + W DG  +K   ++PT  KF +
Sbjct: 437 TVNFRKIPQKDWLDGNLQKALKTEPTSEKFGI 468


>AB120730-1|BAC87887.1|  532|Caenorhabditis elegans PGL-2 protein.
          Length = 532

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 436 TFNYSKAPPRGWQDG--KKDFTSKPTYTKFHV 525
           T N+ K P + W DG  +K   ++PT  KF +
Sbjct: 437 TVNFRKIPQKDWLDGNLQKALKTEPTSEKFGI 468


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,814,708
Number of Sequences: 27780
Number of extensions: 219062
Number of successful extensions: 497
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)