Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G19
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    96   2e-21
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   3.0  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   4.0  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    25   6.9  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.9  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   6.9  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 95.9 bits (228), Expect = 2e-21
 Identities = 47/80 (58%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
 Frame = +3

Query: 138 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVCGAI 314
           M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ +  VD A GR     K  Y + G +
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59

Query: 315 RRMGESDDCIVRLTKKDGIL 374
           R  GESDDCI RLT +DG+L
Sbjct: 60  RSKGESDDCINRLTTQDGLL 79


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 238 SCTEAWSLAWMRRLLAEHFLGQYKST 161
           S T+A SL W  +   +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 220 SLAWMRRLLAEHFLGQYKSTNSPASFCILYV 128
           SL  M  +L EH+ G++    SP   CI+ V
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCIIPV 605


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 102 KLLKNFPLQTYKMQNDAGEFVDLYC 176
           + +  F   TYK  ND GEF   YC
Sbjct: 196 RFMDGFSSHTYKFVNDKGEF--YYC 218


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = -2

Query: 268 PVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 128
           P+     A+T  TE W++A+    +A  F     S       C  Y+
Sbjct: 482 PILQKICAVTRTTETWAVAFAHYEMAVAFFESNGSKKEGLKHCDAYL 528


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -1

Query: 314 DSPT--DNIHFRCVSSTTCGGVYVSN 243
           D PT  D I   C     CGG+Y +N
Sbjct: 214 DEPTRHDIIRHACPGGGACGGMYTAN 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,756
Number of Sequences: 5004
Number of extensions: 34180
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)