Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G19
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               28   4.0  
SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)                   28   4.0  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 275

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 22/97 (22%), Positives = 37/97 (38%)
 Frame = +3

Query: 24  PCTVWTCRFFMFYLTYYQHFDEF*PVKLLKNFPLQTYKMQNDAGEFVDLYCPRKCSASNR 203
           P T  TC   +   T Y   +   P  L+    L ++ +  D+GE V L      + +  
Sbjct: 188 PFTDVTCTLIIRRKTLYYWVNLIIPCMLITVLSLLSFIVSTDSGERVGLVITDLLALT-- 245

Query: 204 LIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAI 314
                      L++AD+ P T        +Y++C  I
Sbjct: 246 --------VFMLIVADILPPTSEVVPVISIYIICSTI 274


>SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)
          Length = 362

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 97  P*NYLKTFHCRHIKCRTTPVNSLTCTARGNARPATASS 210
           P N+ KTF CR+  C  TP  S  C  +   +  +A S
Sbjct: 89  PRNFTKTFSCRY--CFQTPEESYHCIKKTTCKVVSAVS 124


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 367 PSFFVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAIT 239
           P   V ++ Q   +P + +AP+TT + + + A      T   T
Sbjct: 396 PEISVTISTQPKKAPGITVAPETTVVPETTVASETTAETHQTT 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,462,142
Number of Sequences: 59808
Number of extensions: 254390
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)