Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G15
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    89   4e-19
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    80   3e-16
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    56   4e-09
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    29   0.77 
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom...    26   4.1  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.2  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   7.2  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    25   7.2  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   9.5  

>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 89.4 bits (212), Expect = 4e-19
 Identities = 50/158 (31%), Positives = 81/158 (51%)
 Frame = +1

Query: 139 TEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDT 318
           T + ++ H + +D RSDGRS  ++R + +  + +S A+GSA +R      + GIK EI  
Sbjct: 21  TPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAE 80

Query: 319 PKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVX 498
           P  + P+ G I   ++ S   + +F+     +LA  +S  + +    S   +L+ LCI  
Sbjct: 81  PFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFE 140

Query: 499 GKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIP 612
            K  W LY DI+ L   G+ FD    A  AAL   ++P
Sbjct: 141 KKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLP 178


>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 45/156 (28%), Positives = 75/156 (48%)
 Frame = +1

Query: 145 KVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPK 324
           K F+++ +++  R DGR   D+R +E++        G   +   +T ++  I TEI  P 
Sbjct: 12  KEFVLNSLEKGLRLDGRQLSDFRSLEIQ---FGKEYGQVDVSFGHTRVMARITTEITKPY 68

Query: 325 PDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVXGK 504
            D+P  G      + +  A   FE     +    IS  +++A   S A D + LCI+ G+
Sbjct: 69  TDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISGQ 128

Query: 505 QCWKLYVDILILECGGNLFDAVSLATKAALFNTRIP 612
           +CW +   +  +   GNL DA  +A  AAL + R P
Sbjct: 129 KCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRP 164


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 41/150 (27%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
 Frame = +1

Query: 181 RSDGRSNIDYRPMELETDVVSHASGSARLRLANT-DILVGIKTEIDTPKPDKPDMGKIEF 357
           R+DGRS    RP+  + DV+   +GSAR++ A++ +I++G+K E+    P+    GK   
Sbjct: 23  RNDGRSIDQLRPLSGQVDVLPGTNGSARVKWASSVEIVIGVKAEVGDATPEG---GKYVA 79

Query: 358 FVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVXGKQCWKLYVDILI 537
            V+ S + +   + R  + + S +++ +Q   ++     LK        + W ++VD ++
Sbjct: 80  SVEISPSVS--IQNRETDEIPSFLTSALQDLLNALAVDYLK----FTPSKAWIIHVDAVV 133

Query: 538 LECGG---NLFDAVSLATKAALFNTRIPLV 618
           +       N+  A+SLA   AL  TR+P +
Sbjct: 134 ILSSSPYENILSALSLAAYLALQTTRLPKI 163


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 418 LNFLHHALRIPVWHLLSNQQKTQFFPY 338
           L F+ HAL IP+   +S+ ++T+ FP+
Sbjct: 11  LAFVAHALEIPISCAVSHNEQTEIFPH 37


>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 172 EDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDIL 291
           E  R+DGR   + R  +    +    +GSA + L NT +L
Sbjct: 10  EGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVL 49


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 332 NQIWEKLSFLLIAQQMPHRNSKGVVE-KI*LAAFQTQCKEHITHHKPLI*SNYALXKANS 508
           N IW  L+++++   MP  +S+ +++ K      +T C +    H+      YA+  A +
Sbjct: 270 NMIWAGLTWVIVCFTMPETHSETLLDFKARYLRKKTNCDKWYNEHEHQRDPAYAIRTALT 329

Query: 509 AG 514
            G
Sbjct: 330 RG 331


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 350 IFPISGLSGFGVSISVLMPTKMSVFARRSRAEPLAWLTTSVS 225
           +FPI  +SG G  ++   PT  + F   +    L+W+  + S
Sbjct: 735 MFPIHRISGVGSEVNESTPTFATNFETYTMVFQLSWILHTAS 776


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +1

Query: 334 PDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVXGK 504
           P+ GK    V CS++     +G  G  + SSIS  ++R  H  + F+   LCI+  K
Sbjct: 91  PEEGKT-LMVACSSD-----KGLCG-GIHSSISRLIRRELHDPKTFENTSLCILGEK 140


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 18  CQLVRVAGNISELLVNINDKTRYFR 92
           C L       S L VN+ND TRY +
Sbjct: 269 CALNSSVAGFSTLAVNVNDFTRYVK 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,152
Number of Sequences: 5004
Number of extensions: 57694
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)