Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_G15
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92838-10|CAB07412.2| 312|Caenorhabditis elegans Hypothetical p... 107 5e-24
Z92832-9|CAB07377.2| 312|Caenorhabditis elegans Hypothetical pr... 107 5e-24
U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical p... 75 6e-14
U39999-1|AAK93855.1| 277|Caenorhabditis elegans Hypothetical pr... 31 0.71
AF016422-8|AAW88392.1| 289|Caenorhabditis elegans Serpentine re... 29 3.8
AF016441-6|AAX55687.1| 440|Caenorhabditis elegans Paps (adenosi... 28 6.7
AF016441-5|AAX55688.1| 408|Caenorhabditis elegans Paps (adenosi... 28 6.7
AF016441-4|AAX55686.1| 425|Caenorhabditis elegans Paps (adenosi... 28 6.7
>Z92838-10|CAB07412.2| 312|Caenorhabditis elegans Hypothetical
protein F31D4.1 protein.
Length = 312
Score = 107 bits (258), Expect = 5e-24
Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 7/176 (3%)
Frame = +1
Query: 142 EKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLA-NTDILVGIKTEIDT 318
EK+F++ G + + R+DGRS D+R + LE V+S +GS R++L TD+L GIK E+++
Sbjct: 9 EKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKLELES 68
Query: 319 --PKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFD----LK 480
+ +K I F VD SANA+ +F G+GG+ A +S Q AY S+A D L
Sbjct: 69 YDAETEKEPKQPINFNVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDIMPNLA 126
Query: 481 QLCIVXGKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNV 648
+ + G + WK+ VDI +L+ G++ DA+S+A AL + P DGG V
Sbjct: 127 KTQLADGYR-WKINVDISVLQWDGSVSDAISIAIIGALSDLEFPEGDVAPDDGGKV 181
>Z92832-9|CAB07377.2| 312|Caenorhabditis elegans Hypothetical
protein F31D4.1 protein.
Length = 312
Score = 107 bits (258), Expect = 5e-24
Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 7/176 (3%)
Frame = +1
Query: 142 EKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLA-NTDILVGIKTEIDT 318
EK+F++ G + + R+DGRS D+R + LE V+S +GS R++L TD+L GIK E+++
Sbjct: 9 EKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKLELES 68
Query: 319 --PKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFD----LK 480
+ +K I F VD SANA+ +F G+GG+ A +S Q AY S+A D L
Sbjct: 69 YDAETEKEPKQPINFNVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDIMPNLA 126
Query: 481 QLCIVXGKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNV 648
+ + G + WK+ VDI +L+ G++ DA+S+A AL + P DGG V
Sbjct: 127 KTQLADGYR-WKINVDISVLQWDGSVSDAISIAIIGALSDLEFPEGDVAPDDGGKV 181
>U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical
protein F37C12.13a protein.
Length = 434
Score = 74.5 bits (175), Expect = 6e-14
Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Frame = +1
Query: 142 EKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTP 321
EK I+ ++ R D RS ++R ++L VV G+A + NT ++ + EI P
Sbjct: 10 EKAVILEALKIGKRFDFRSLEEFRDVKL---VVGAEVGTAICTIGNTKVMAAVSAEIAEP 66
Query: 322 KPDKPDMGKIEFFVDCS--ANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIV 495
+P G I VD S AN E + G + + + ++ S+ D++ LCI
Sbjct: 67 SSMRPHKGVINIDVDLSPMANYANEHDRLGSKGM--ELIRLLELIIRDSRCIDVEALCIR 124
Query: 496 XGKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIPLV 618
GK+ WK+ VD+ IL+ G+L D LA AL + R P V
Sbjct: 125 AGKEIWKIRVDVRILDEDGSLLDCACLAAITALQHFRRPNV 165
>U39999-1|AAK93855.1| 277|Caenorhabditis elegans Hypothetical
protein F41G3.14 protein.
Length = 277
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 511 WKLYVDILILECGGNLFDAVSLATKAALFNTRIPLV 618
W+L++ + +L GN DA A AAL + ++P +
Sbjct: 126 WQLHIIVKVLSLEGNFLDAAVCALGAALVDAKLPSI 161
>AF016422-8|AAW88392.1| 289|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 60 protein.
Length = 289
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 489 HCXRQTVLETLC*YIDLGMWG*FV*CSFISNQSSSV*HKD-TISKSLVDGW 638
HC T+L +C Y + FV C F + SS H T+SK + W
Sbjct: 122 HCPTATILLLMCAYTVFEQYILFVMCDFTIDVPSSCMHLGCTVSKCYFEYW 172
>AF016441-6|AAX55687.1| 440|Caenorhabditis elegans Paps (adenosine
3'-phosphate 5'-phosphosulfate) transporter protein 1,
isoform b protein.
Length = 440
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 532 LILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGN 645
+IL G LFDA +L + ALF+T+ + K +M G N
Sbjct: 286 MILMAGYLLFDAFTLNWQKALFDTKPKVSKYQMMFGVN 323
>AF016441-5|AAX55688.1| 408|Caenorhabditis elegans Paps (adenosine
3'-phosphate 5'-phosphosulfate) transporter protein 1,
isoform c protein.
Length = 408
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 532 LILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGN 645
+IL G LFDA +L + ALF+T+ + K +M G N
Sbjct: 286 MILMAGYLLFDAFTLNWQKALFDTKPKVSKYQMMFGVN 323
>AF016441-4|AAX55686.1| 425|Caenorhabditis elegans Paps (adenosine
3'-phosphate 5'-phosphosulfate) transporter protein 1,
isoform a protein.
Length = 425
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 532 LILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGN 645
+IL G LFDA +L + ALF+T+ + K +M G N
Sbjct: 271 MILMAGYLLFDAFTLNWQKALFDTKPKVSKYQMMFGVN 308
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,516,922
Number of Sequences: 27780
Number of extensions: 334354
Number of successful extensions: 732
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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