Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G12
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    90   2e-19
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.1  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    25   7.3  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 45/80 (56%), Positives = 58/80 (72%)
 Frame = +3

Query: 102 VGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDD 281
           V FKKRAPRAIKEI  FA+K M T ++RVD  LNK +W +G+RNVP R+R+RLSR R+D+
Sbjct: 28  VSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVWKRGIRNVPHRLRLRLSRKRSDE 87

Query: 282 EXSAHKLFTLXTYVPVASIK 341
           +  A  L+T    V VA+ K
Sbjct: 88  DDKA--LYTYVQAVDVANPK 105



 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = +2

Query: 35  KSAINEVVTREYTVNLHKRLHGCWI*KACPKS 130
           KSAIN+VVTR+YT+++HKRL+G    K  P++
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRA 37


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 385 GVYSWLASTFSVCKPLID 332
           GV  WLAST+S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -1

Query: 229 LTPL-DQRNLFKRVSTRMSGVPICFSANFRISLIALGARFLN 107
           L P+ DQ  L  R+  R SG  +C+S  F   L      + N
Sbjct: 22  LAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRN 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,494,673
Number of Sequences: 5004
Number of extensions: 26260
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)