Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_G12
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1181 - 24985963-24986242,24987109-24987197 110 4e-25
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649 109 8e-25
06_02_0140 + 12255418-12255512,12257514-12257793 108 2e-24
01_04_0060 - 15552024-15552070,15552249-15552435,15552643-155529... 29 1.3
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272... 29 1.8
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 27 7.2
01_01_1216 - 9827190-9827531 27 7.2
>08_02_1181 - 24985963-24986242,24987109-24987197
Length = 122
Score = 110 bits (265), Expect = 4e-25
Identities = 52/88 (59%), Positives = 68/88 (77%), Gaps = 2/88 (2%)
Frame = +3
Query: 108 FKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDDEX 287
FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS G+R+VP RVRVR++R RND+E
Sbjct: 32 FKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSSGIRSVPRRVRVRIARKRNDEED 91
Query: 288 SAHKLFTLXTY--VPVASIKGLXTENVD 365
+ +L++L T VP +KGL T+ VD
Sbjct: 92 AKEELYSLVTVAEVPPEGLKGLGTKVVD 119
Score = 45.6 bits (103), Expect = 2e-05
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 23 EXKGKSAINE-VVTREYTVNLHKRLHGCWI*KACPKSNQRNPKVR*KTDGNS 175
E KG +A E VVTREYT+NLHKRLH C K P + + K K G +
Sbjct: 3 EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTT 54
>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
Length = 139
Score = 109 bits (263), Expect = 8e-25
Identities = 52/97 (53%), Positives = 72/97 (74%), Gaps = 2/97 (2%)
Frame = +3
Query: 81 YTNDFMAVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFRVRVRL 260
Y D ++ FKK+AP AIKEIRKFA+K MGT DIR+D +LNK +W+ G+R+VP RVRVR+
Sbjct: 41 YAPDIVST-FKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGIRSVPRRVRVRI 99
Query: 261 SRXRNDDEXSAHKLFTLXTY--VPVASIKGLXTENVD 365
SR RND+E + +L++L T +P +KGL T+ V+
Sbjct: 100 SRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVE 136
Score = 44.0 bits (99), Expect = 6e-05
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +2
Query: 47 NEVVTREYTVNLHKRLHGC 103
+EVVTREYT+NLHKRLHGC
Sbjct: 13 DEVVTREYTINLHKRLHGC 31
>06_02_0140 + 12255418-12255512,12257514-12257793
Length = 124
Score = 108 bits (259), Expect = 2e-24
Identities = 51/88 (57%), Positives = 68/88 (77%), Gaps = 2/88 (2%)
Frame = +3
Query: 108 FKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDDEX 287
FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS G+R+VP RVRVR++R RND+E
Sbjct: 34 FKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRSVPRRVRVRIARRRNDEED 93
Query: 288 SAHKLFTLXTY--VPVASIKGLXTENVD 365
+ +L++L T VP +KGL T+ V+
Sbjct: 94 AKEELYSLVTVAEVPQEGLKGLGTKLVE 121
Score = 48.0 bits (109), Expect = 4e-06
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +2
Query: 17 KGEXKGKSAINEVVTREYTVNLHKRLHGCWI*KACPKS 130
K + G + +EVVTREYT+NLHKRLHGC K P +
Sbjct: 4 KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNA 41
>01_04_0060 -
15552024-15552070,15552249-15552435,15552643-15552930,
15553027-15553221,15553330-15553431,15553588-15553842,
15553936-15553995
Length = 377
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 78 IYTNDFMAVGFKKRAPRAIKEIRKFAEKQMGTPDIRV 188
+Y D + V R+P KE+RK EK M TPDI +
Sbjct: 41 VYCQDSLLVFSTGRSPTLYKELRK--EKPMLTPDITI 75
>05_07_0331 -
29324967-29326256,29326919-29327020,29327226-29327278,
29327628-29327674,29327762-29327841,29327933-29328016,
29328383-29328433,29328925-29329050,29329231-29329347,
29329710-29329851,29329986-29330053,29330509-29330608,
29330713-29330840,29330929-29330997,29331083-29331205
Length = 859
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +3
Query: 54 LLPVNIQLIYTNDFMAVGFKKRAPRAIKEIRKFAEKQMG--TPD-IRVDTRLNKFLWSKG 224
LL ++ L+ +N F+ G + R I+E+ + + G T D + VDT L +F+W +G
Sbjct: 55 LLALSDDLVKSNVFIE-GVSHKIRRQIEELERAGGVESGALTVDGVPVDTYLTRFVWDEG 113
>02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 63 VNIQLIYTNDFMAVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVR 230
+NI+L Y D +GF+ RA KEI ++ +R+ +K ++SK V+
Sbjct: 1090 INIKLPYKGDASGMGFEVRAIEN-KEIMNICASKIKIDQVRLLEDPSKTVYSKTVQ 1144
>01_01_1216 - 9827190-9827531
Length = 113
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 111 KKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFR 245
KK+ + K+ +K + +P I +DTR+ K + NV FR
Sbjct: 45 KKKKKKKKKKKKKKKHMKNASPCISMDTRIKKLAMRPIIGNVSFR 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,313,364
Number of Sequences: 37544
Number of extensions: 156553
Number of successful extensions: 327
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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