Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G12
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...   132   1e-31
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...   102   1e-22
Z82274-12|CAJ76931.1|  304|Caenorhabditis elegans Hypothetical p...    28   3.7  
Z82274-11|CAB54268.2|  315|Caenorhabditis elegans Hypothetical p...    28   3.7  
AF324487-1|AAK49908.1|  315|Caenorhabditis elegans JC8.12-like p...    28   3.7  
AC024860-2|AAN84888.1|  173|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score =  132 bits (319), Expect = 1e-31
 Identities = 60/91 (65%), Positives = 74/91 (81%)
 Frame = +3

Query: 102 VGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDD 281
           +G KKRAPRAI EI+KFA+ QM T D+RVDT+LNKF+WSKG++NVP+RVRVRLSR RN+D
Sbjct: 32  IGSKKRAPRAIDEIKKFAKIQMKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNED 91

Query: 282 EXSAHKLFTLXTYVPVASIKGLXTENVDASQ 374
           E SA KL+TL TYVP  +  GL   NVD+ +
Sbjct: 92  EDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 122



 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +2

Query: 14  PKGEXKGKSAINEVVTREYTVNLHKRLHGCWI*KACPKS 130
           PK E K +S INEVVTREYT+++H R+ G    K  P++
Sbjct: 3   PKNEKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRA 41


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score =  102 bits (245), Expect = 1e-22
 Identities = 45/70 (64%), Positives = 56/70 (80%)
 Frame = +3

Query: 165 MGTPDIRVDTRLNKFLWSKGVRNVPFRVRVRLSRXRNDDEXSAHKLFTLXTYVPVASIKG 344
           M T D+RVDT+LNKF+WSKG++NVP+RVRVRLSR RN+DE SA KL+TL TYVP  +  G
Sbjct: 1   MKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHG 60

Query: 345 LXTENVDASQ 374
           L   NVD+ +
Sbjct: 61  LTNVNVDSEE 70


>Z82274-12|CAJ76931.1|  304|Caenorhabditis elegans Hypothetical
           protein JC8.12b protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 300 LFTLXTYVPVASIKGLXTENVDASQE*TPLL 392
           L+T+  ++ VAS +G+   N D+ +  TP+L
Sbjct: 70  LYTISQWITVASFEGIAMPNFDSVKRLTPIL 100


>Z82274-11|CAB54268.2|  315|Caenorhabditis elegans Hypothetical
           protein JC8.12a protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 300 LFTLXTYVPVASIKGLXTENVDASQE*TPLL 392
           L+T+  ++ VAS +G+   N D+ +  TP+L
Sbjct: 81  LYTISQWITVASFEGIAMPNFDSVKRLTPIL 111


>AF324487-1|AAK49908.1|  315|Caenorhabditis elegans JC8.12-like
           protein protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 300 LFTLXTYVPVASIKGLXTENVDASQE*TPLL 392
           L+T+  ++ VAS +G+   N D+ +  TP+L
Sbjct: 81  LYTISQWITVASFEGIAMPNFDSVKRLTPIL 111


>AC024860-2|AAN84888.1|  173|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.3 protein.
          Length = 173

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 93  FMAVGFKKRAPRAIKEIRKFAEKQMGTPDIRV 188
           F  V  K + P+ I++IRKF +  + +PD  V
Sbjct: 125 FYNVDSKIKQPQVIEDIRKFVKIHVDSPDSEV 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,183,307
Number of Sequences: 27780
Number of extensions: 146273
Number of successful extensions: 326
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)